Literature DB >> 19680289

The structure of bacterial RNA polymerase in complex with the essential transcription elongation factor NusA.

Xiao Yang1, Seeseei Molimau, Geoff P Doherty, Elecia B Johnston, Jon Marles-Wright, Rosalba Rothnagel, Ben Hankamer, Richard J Lewis, Peter J Lewis.   

Abstract

There are three stages of transcribing DNA into RNA. These stages are initiation, elongation and termination, and they are well-understood biochemically. However, despite the plethora of structural information made available on RNA polymerase in the last decade, little is available for RNA polymerase in complex with transcription elongation factors. To understand the mechanisms of transcriptional regulation, we describe the first structure, to our knowledge, for a bacterial RNA polymerase in complex with an essential transcription elongation factor. The resulting structure formed between the RNA polymerase and NusA from Bacillus subtilis provides important insights into the transition from an initiation complex to an elongation complex, and how NusA is able to modulate transcription elongation and termination.

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Year:  2009        PMID: 19680289      PMCID: PMC2750059          DOI: 10.1038/embor.2009.155

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  32 in total

1.  Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

Authors:  G Zhang; E A Campbell; L Minakhin; C Richter; K Severinov; S A Darst
Journal:  Cell       Date:  1999-09-17       Impact factor: 41.582

Review 2.  Bacterial transcription elongation factors: new insights into molecular mechanism of action.

Authors:  Sergei Borukhov; Jookyung Lee; Oleg Laptenko
Journal:  Mol Microbiol       Date:  2005-03       Impact factor: 3.501

3.  The interaction between sigma70 and the beta-flap of Escherichia coli RNA polymerase inhibits extension of nascent RNA during early elongation.

Authors:  Bryce E Nickels; Sean J Garrity; Vladimir Mekler; Leonid Minakhin; Konstantin Severinov; Richard H Ebright; Ann Hochschild
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-10       Impact factor: 11.205

4.  Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis.

Authors:  Achillefs N Kapanidis; Emmanuel Margeat; Ted A Laurence; Sören Doose; Sam On Ho; Jayanta Mukhopadhyay; Ekaterine Kortkhonjia; Vladimir Mekler; Richard H Ebright; Shimon Weiss
Journal:  Mol Cell       Date:  2005-11-11       Impact factor: 17.970

5.  The NusA:RNA polymerase ratio is increased at sites of rRNA synthesis in Bacillus subtilis.

Authors:  Karen M Davies; Amy J Dedman; Stephanie van Horck; Peter J Lewis
Journal:  Mol Microbiol       Date:  2005-07       Impact factor: 3.501

6.  Structural basis for transcription elongation by bacterial RNA polymerase.

Authors:  Dmitry G Vassylyev; Marina N Vassylyeva; Anna Perederina; Tahir H Tahirov; Irina Artsimovitch
Journal:  Nature       Date:  2007-06-20       Impact factor: 49.962

7.  Overproduction and purification of recombinant Bacillus subtilis RNA polymerase.

Authors:  Xiao Yang; Peter J Lewis
Journal:  Protein Expr Purif       Date:  2008-01-24       Impact factor: 1.650

8.  An allosteric path to transcription termination.

Authors:  Vitaly Epshtein; Christopher J Cardinale; Andrei E Ruckenstein; Sergei Borukhov; Evgeny Nudler
Journal:  Mol Cell       Date:  2007-12-28       Impact factor: 17.970

9.  Structure of a Mycobacterium tuberculosis NusA-RNA complex.

Authors:  Barbara Beuth; Simon Pennell; Kristine B Arnvig; Stephen R Martin; Ian A Taylor
Journal:  EMBO J       Date:  2005-09-29       Impact factor: 11.598

10.  Autogenous regulation of transcription termination factor Rho and the requirement for Nus factors in Bacillus subtilis.

Authors:  C J Ingham; J Dennis; P A Furneaux
Journal:  Mol Microbiol       Date:  1999-01       Impact factor: 3.501

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  38 in total

1.  Transcription factor GreA contributes to resolving promoter-proximal pausing of RNA polymerase in Bacillus subtilis cells.

Authors:  Yoko Kusuya; Ken Kurokawa; Shu Ishikawa; Naotake Ogasawara; Taku Oshima
Journal:  J Bacteriol       Date:  2011-04-22       Impact factor: 3.490

Review 2.  Essential biological processes of an emerging pathogen: DNA replication, transcription, and cell division in Acinetobacter spp.

Authors:  Andrew Robinson; Anthony J Brzoska; Kylie M Turner; Ryan Withers; Elizabeth J Harry; Peter J Lewis; Nicholas E Dixon
Journal:  Microbiol Mol Biol Rev       Date:  2010-06       Impact factor: 11.056

Review 3.  Bacterial Transcription as a Target for Antibacterial Drug Development.

Authors:  Cong Ma; Xiao Yang; Peter J Lewis
Journal:  Microbiol Mol Biol Rev       Date:  2016-01-13       Impact factor: 11.056

Review 4.  RNA polymerase between lesion bypass and DNA repair.

Authors:  Alexandra M Deaconescu
Journal:  Cell Mol Life Sci       Date:  2013-06-27       Impact factor: 9.261

5.  The interaction surface of a bacterial transcription elongation factor required for complex formation with an antiterminator during transcription antitermination.

Authors:  Saurabh Mishra; Shalini Mohan; Sapna Godavarthi; Ranjan Sen
Journal:  J Biol Chem       Date:  2013-08-02       Impact factor: 5.157

6.  Antisense oligonucleotide-stimulated transcriptional pausing reveals RNA exit channel specificity of RNA polymerase and mechanistic contributions of NusA and RfaH.

Authors:  Kellie E Kolb; Pyae P Hein; Robert Landick
Journal:  J Biol Chem       Date:  2013-11-25       Impact factor: 5.157

7.  Three-dimensional EM structure of an intact activator-dependent transcription initiation complex.

Authors:  Brian P Hudson; Joel Quispe; Samuel Lara-González; Younggyu Kim; Helen M Berman; Eddy Arnold; Richard H Ebright; Catherine L Lawson
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-10       Impact factor: 11.205

8.  Alterations in the β flap and β' dock domains of the RNA polymerase abolish NusA-mediated feedback regulation of the metY-nusA-infB operon.

Authors:  Göran O Bylund; Stefan Nord; J Mattias Lövgren; P Mikael Wikström
Journal:  J Bacteriol       Date:  2011-06-17       Impact factor: 3.490

Review 9.  The interaction between bacterial transcription factors and RNA polymerase during the transition from initiation to elongation.

Authors:  Xiao Yang; Peter J Lewis
Journal:  Transcription       Date:  2010 Sep-Oct

10.  NusA-dependent transcription termination prevents misregulation of global gene expression.

Authors:  Smarajit Mondal; Alexander V Yakhnin; Aswathy Sebastian; Istvan Albert; Paul Babitzke
Journal:  Nat Microbiol       Date:  2016-01-11       Impact factor: 17.745

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