Literature DB >> 19679678

PopABC: a program to infer historical demographic parameters.

Joao S Lopes1, David Balding, Mark A Beaumont.   

Abstract

UNLABELLED: PopABC is a computer package for inferring the pattern of demographic divergence of closely related populations and species. The software performs coalescent simulation in the framework of approximate Bayesian computation (ABC). PopABC can also be used to perform Bayesian model choice to discriminate between different demographic scenarios. The program can be used either for research or for education and teaching purposes.
AVAILABILITY AND IMPLEMENTATION: Source code and binaries are freely available at http://www.reading.ac.uk/ approximately sar05sal/software.htm. The program was implemented in C and can run on UNIX, MacOSX and Windows operating systems.

Mesh:

Year:  2009        PMID: 19679678     DOI: 10.1093/bioinformatics/btp487

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  30 in total

Review 1.  Genetic structure in African populations: implications for human demographic history.

Authors:  C A Lambert; S A Tishkoff
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2010-05-07

Review 2.  The impact of recent events on human genetic diversity.

Authors:  Mark A Jobling
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-03-19       Impact factor: 6.237

Review 3.  Recombination rate variation and speciation: theoretical predictions and empirical results from rabbits and mice.

Authors:  Michael W Nachman; Bret A Payseur
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-02-05       Impact factor: 6.237

4.  The confounding effects of population structure, genetic diversity and the sampling scheme on the detection and quantification of population size changes.

Authors:  Lounès Chikhi; Vitor C Sousa; Pierre Luisi; Benoit Goossens; Mark A Beaumont
Journal:  Genetics       Date:  2010-08-25       Impact factor: 4.562

5.  Splendor and misery of indirect measures of migration and gene flow.

Authors:  G Guillot
Journal:  Heredity (Edinb)       Date:  2010-05-12       Impact factor: 3.821

6.  Lack of confidence in approximate Bayesian computation model choice.

Authors:  Christian P Robert; Jean-Marie Cornuet; Jean-Michel Marin; Natesh S Pillai
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-29       Impact factor: 11.205

7.  ABCtoolbox: a versatile toolkit for approximate Bayesian computations.

Authors:  Daniel Wegmann; Christoph Leuenberger; Samuel Neuenschwander; Laurent Excoffier
Journal:  BMC Bioinformatics       Date:  2010-03-04       Impact factor: 3.169

8.  Genomic inference accurately predicts the timing and severity of a recent bottleneck in a nonmodel insect population.

Authors:  Rajiv C McCoy; Nandita R Garud; Joanna L Kelley; Carol L Boggs; Dmitri A Petrov
Journal:  Mol Ecol       Date:  2013-12-05       Impact factor: 6.185

9.  The influence of the arid Andean high plateau on the phylogeography and population genetics of guanaco (Lama guanicoe) in South America.

Authors:  Juan C Marin; Benito A González; Elie Poulin; Ciara S Casey; Warren E Johnson
Journal:  Mol Ecol       Date:  2012-12-03       Impact factor: 6.185

10.  Rapid radiation in spiny lobsters (Palinurus spp) as revealed by classic and ABC methods using mtDNA and microsatellite data.

Authors:  Ferran Palero; Joao Lopes; Pere Abelló; Enrique Macpherson; Marta Pascual; Mark A Beaumont
Journal:  BMC Evol Biol       Date:  2009-11-09       Impact factor: 3.260

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