Literature DB >> 19679136

A model of interactions between radiation-induced oxidative stress, protein and DNA damage in Deinococcus radiodurans.

Igor Shuryak1, David J Brenner.   

Abstract

Ionizing radiation triggers oxidative stress, which can have a variety of subtle and profound biological effects. Here we focus on mathematical modeling of potential synergistic interactions between radiation damage to DNA and oxidative stress-induced damage to proteins involved in DNA repair/replication. When sensitive sites on these proteins are attacked by radiation-induced radicals, correct repair of dangerous DNA lesions such as double strand breaks (DSBs) can be compromised. In contrast, if oxidation of important proteins is prevented by strong antioxidant defenses, DNA repair may function more efficiently. These processes probably occur to some extent even at low doses of radiation/oxidative stress, but they are easiest to investigate at high doses, where both DNA and protein damage are extensive. As an example, we use data on survival of Deinococcus radiodurans after high doses (thousands of Gy) of acute and chronic irradiation. Our model of radiogenic oxidative stress is consistent with these data and can potentially be generalized to other organisms and lower radiation doses.

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Year:  2009        PMID: 19679136      PMCID: PMC2774503          DOI: 10.1016/j.jtbi.2009.08.003

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  49 in total

1.  Radiation disrupts protein-DNA complexes through damage to the protein. The lac repressor-operator system.

Authors:  S Eon; F Culard; D Sy; M Charlier; M Spotheim-Maurizot
Journal:  Radiat Res       Date:  2001-07       Impact factor: 2.841

2.  Response of a DNA-binding protein to radiation-induced oxidative stress.

Authors:  Françoise Culard; Alain Gervais; Guillaume de Vuyst; Mélanie Spotheim-Maurizot; Michel Charlier
Journal:  J Mol Biol       Date:  2003-05-16       Impact factor: 5.469

Review 3.  Genome of the extremely radiation-resistant bacterium Deinococcus radiodurans viewed from the perspective of comparative genomics.

Authors:  K S Makarova; L Aravind; Y I Wolf; R L Tatusov; K W Minton; E V Koonin; M J Daly
Journal:  Microbiol Mol Biol Rev       Date:  2001-03       Impact factor: 11.056

4.  Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1.

Authors:  O White; J A Eisen; J F Heidelberg; E K Hickey; J D Peterson; R J Dodson; D H Haft; M L Gwinn; W C Nelson; D L Richardson; K S Moffat; H Qin; L Jiang; W Pamphile; M Crosby; M Shen; J J Vamathevan; P Lam; L McDonald; T Utterback; C Zalewski; K S Makarova; L Aravind; M J Daly; K W Minton; R D Fleischmann; K A Ketchum; K E Nelson; S Salzberg; H O Smith; J C Venter; C M Fraser
Journal:  Science       Date:  1999-11-19       Impact factor: 47.728

5.  DNA protection mechanisms are not involved in the radioresistance of the hyperthermophilic archaea Pyrococcus abyssi and P. furiosus.

Authors:  E Gérard; E Jolivet; D Prieur; P Forterre
Journal:  Mol Genet Genomics       Date:  2001-09       Impact factor: 3.291

Review 6.  Redox signaling.

Authors:  Henry Jay Forman; Martine Torres; Jon Fukuto
Journal:  Mol Cell Biochem       Date:  2002 May-Jun       Impact factor: 3.396

7.  X radiation causes a persistent induction of reactive oxygen species and a delayed reinduction of TP53 in normal human diploid fibroblasts.

Authors:  R E Rugo; M B Secretan; R H Schiestl
Journal:  Radiat Res       Date:  2002-08       Impact factor: 2.841

8.  Oxidative metabolism modulates signal transduction and micronucleus formation in bystander cells from alpha-particle-irradiated normal human fibroblast cultures.

Authors:  Edouard I Azzam; Sonia M De Toledo; Douglas R Spitz; John B Little
Journal:  Cancer Res       Date:  2002-10-01       Impact factor: 12.701

9.  Proapoptotic and redox state-related signaling of reactive oxygen species generated by transformed fibroblasts.

Authors:  Mareike Schimmel; Georg Bauer
Journal:  Oncogene       Date:  2002-08-29       Impact factor: 9.867

10.  Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation.

Authors:  Yongqing Liu; Jizhong Zhou; Marina V Omelchenko; Alex S Beliaev; Amudhan Venkateswaran; Julia Stair; Liyou Wu; Dorothea K Thompson; Dong Xu; Igor B Rogozin; Elena K Gaidamakova; Min Zhai; Kira S Makarova; Eugene V Koonin; Michael J Daly
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-21       Impact factor: 11.205

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  11 in total

1.  Mechanistic analysis of the contributions of DNA and protein damage to radiation-induced cell death.

Authors:  Igor Shuryak; David J Brenner
Journal:  Radiat Res       Date:  2012-06-04       Impact factor: 2.841

2.  Effects of Mn and Fe levels on Bacillus subtilis spore resistance and effects of Mn2+, other divalent cations, orthophosphate, and dipicolinic acid on protein resistance to ionizing radiation.

Authors:  Amanda C Granger; Elena K Gaidamakova; Vera Y Matrosova; Michael J Daly; Peter Setlow
Journal:  Appl Environ Microbiol       Date:  2010-11-05       Impact factor: 4.792

3.  Effects of radiation quality on interactions between oxidative stress, protein and DNA damage in Deinococcus radiodurans.

Authors:  Igor Shuryak; David J Brenner
Journal:  Radiat Environ Biophys       Date:  2010-06-24       Impact factor: 1.925

4.  MicroRNA-145 sensitizes cervical cancer cells to low-dose irradiation by downregulating OCT4 expression.

Authors:  Siqi Yan; Xiangjun Li; Qiao Jin; Jun Yuan
Journal:  Exp Ther Med       Date:  2016-09-20       Impact factor: 2.447

5.  Small-molecule antioxidant proteome-shields in Deinococcus radiodurans.

Authors:  Michael J Daly; Elena K Gaidamakova; Vera Y Matrosova; Juliann G Kiang; Risaku Fukumoto; Duck-Yeon Lee; Nancy B Wehr; Gabriela A Viteri; Barbara S Berlett; Rodney L Levine
Journal:  PLoS One       Date:  2010-09-03       Impact factor: 3.240

6.  Untargeted metabolite profiling reveals that nitric oxide bioynthesis is an endogenous modulator of carotenoid biosynthesis in Deinococcus radiodurans and is required for extreme ionizing radiation resistance.

Authors:  Alex Hansler; Qiuying Chen; Yuliang Ma; Steven S Gross
Journal:  Arch Biochem Biophys       Date:  2015-11-10       Impact factor: 4.013

7.  Infrared laser pulse triggers increased singlet oxygen production in tumour cells.

Authors:  S G Sokolovski; S A Zolotovskaya; A Goltsov; C Pourreyron; A P South; E U Rafailov
Journal:  Sci Rep       Date:  2013-12-12       Impact factor: 4.379

8.  Microbial cells can cooperate to resist high-level chronic ionizing radiation.

Authors:  Igor Shuryak; Vera Y Matrosova; Elena K Gaidamakova; Rok Tkavc; Olga Grichenko; Polina Klimenkova; Robert P Volpe; Michael J Daly
Journal:  PLoS One       Date:  2017-12-20       Impact factor: 3.240

9.  Platinum nanoparticles: an exquisite tool to overcome radioresistance.

Authors:  Sha Li; Erika Porcel; Hynd Remita; Sergio Marco; Matthieu Réfrégiers; Murielle Dutertre; Fabrice Confalonieri; Sandrine Lacombe
Journal:  Cancer Nanotechnol       Date:  2017-07-11

10.  Genome-wide transcriptome and antioxidant analyses on gamma-irradiated phases of deinococcus radiodurans R1.

Authors:  Hemi Luan; Nan Meng; Jin Fu; Xiaomin Chen; Xun Xu; Qiang Feng; Hui Jiang; Jun Dai; Xune Yuan; Yanping Lu; Alexandra A Roberts; Xiao Luo; Maoshan Chen; Shengtao Xu; Jun Li; Chris J Hamilton; Chengxiang Fang; Jun Wang
Journal:  PLoS One       Date:  2014-01-23       Impact factor: 3.240

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