Literature DB >> 19669568

The Davydov/Scott model for energy storage and transport in proteins.

Leonor Cruzeiro1.   

Abstract

The current status of the Davydov/Scott model for energy transfer in proteins is reviewed. After a brief introduction to the theoretical framework and to the basic results, the problems of finite temperature dynamics and of the full quantum and mixed quantum-classical approximations are described, as well as recent results obtained within each of these approximations. A short survey of experimental evidence in support of the Davydov/Scott model is made and absorption spectra are calculated that show the same temperature dependence as that measured in crystalline acetanilide. Future applications of the Davydov/Scott model to protein folding and function and to misfolding diseases are outlined.

Entities:  

Year:  2009        PMID: 19669568      PMCID: PMC2660397          DOI: 10.1007/s10867-009-9129-0

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  39 in total

Review 1.  Protein folding intermediates and pathways studied by hydrogen exchange.

Authors:  S W Englander
Journal:  Annu Rev Biophys Biomol Struct       Date:  2000

2.  Femtosecond study of self-trapped vibrational excitons in crystalline acetanilide.

Authors:  J Edler; P Hamm; A C Scott
Journal:  Phys Rev Lett       Date:  2002-01-25       Impact factor: 9.161

3.  Direct observation of self-trapped vibrational states in alpha-helices.

Authors:  J Edler; R Pfister; V Pouthier; C Falvo; P Hamm
Journal:  Phys Rev Lett       Date:  2004-09-03       Impact factor: 9.161

4.  Vibron-polaron in alpha-helices. II. Two-vibron bound states.

Authors:  Cyril Falvo; Vincent Pouthier
Journal:  J Chem Phys       Date:  2005-11-08       Impact factor: 3.488

5.  A protein-folding reaction under kinetic control.

Authors:  D Baker; J L Sohl; D A Agard
Journal:  Nature       Date:  1992-03-19       Impact factor: 49.962

Review 6.  Recent successes of the energy landscape theory of protein folding and function.

Authors:  P G Wolynes
Journal:  Q Rev Biophys       Date:  2005-11       Impact factor: 5.318

7.  Discovering DNA encodes heredity and prions are infectious proteins.

Authors:  Stanley B Prusiner; Maclyn McCarty
Journal:  Annu Rev Genet       Date:  2006       Impact factor: 16.830

8.  Dynamics of the Davydov-Scott monomer in a thermal bath: comparison of the full quantum and semiclassical approaches.

Authors:  J Cuevas; P A S Silva; F R Romero; L Cruzeiro
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-07-12

9.  The theory of contraction of proteins under their excitation.

Authors:  A S Davydov
Journal:  J Theor Biol       Date:  1973-03       Impact factor: 2.691

10.  The conformational dynamics of a metastable serpin studied by hydrogen exchange and mass spectrometry.

Authors:  Yuko Tsutsui; Lu Liu; Anne Gershenson; Patrick L Wintrode
Journal:  Biochemistry       Date:  2006-05-30       Impact factor: 3.162

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  4 in total

Review 1.  Energy transport mechanism in the form of proton soliton in a one-dimensional hydrogen-bonded polypeptide chain.

Authors:  L Kavitha; R Priya; N Ayyappan; D Gopi; S Jayanthi
Journal:  J Biol Phys       Date:  2015-07-22       Impact factor: 1.365

2.  Exciton dynamics in amide-I [Formula: see text] -helix protein chains with long-range intermolecular interactions.

Authors:  E Nji Nde Aboringong; Alain M Dikandé
Journal:  Eur Phys J E Soft Matter       Date:  2018-03-21       Impact factor: 1.890

3.  Influences of Electromagnetic Energy on Bio-Energy Transport through Protein Molecules in Living Systems and Its Experimental Evidence.

Authors:  Xiaofeng Pang; Shude Chen; Xianghui Wang; Lisheng Zhong
Journal:  Int J Mol Sci       Date:  2016-07-25       Impact factor: 5.923

4.  Vibrational exciton nanoimaging of phases and domains in porphyrin nanocrystals.

Authors:  Eric A Muller; Thomas P Gray; Zhou Zhou; Xinbin Cheng; Omar Khatib; Hans A Bechtel; Markus B Raschke
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-13       Impact factor: 11.205

  4 in total

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