Literature DB >> 19669566

Femtosecond IR pump-probe spectroscopy of nonlinear energy localization in protein models and model proteins.

Peter Hamm1.   

Abstract

This paper reviews our experimental and theoretical efforts toward understanding vibrational self-trapping of the amide I and N-H mode of crystalline acetanilide (ACN), other similar hydrogen-bonded crystals, as well as of model peptides. In contrast to previous works, we used nonlinear IR spectroscopy as the experimental tool, which is specifically sensitive to the anharmonic contributions of the intramolecular interactions (as the nonlinear IR response of set of harmonic oscillators vanishes exactly). Our work reconfirms the previous assignment of the two bands of the amide I mode of ACN as being a self-trapped and a free exciton state, but in addition also establishes the lifetimes of these states and identifies the relevant phonons. Furthermore, we provide evidence for vibrationally self-trapped states also in model alpha-helices. However, given the short lifetime, any biological relevance in the sense of Davydov's initial proposal can probably be ruled out.

Entities:  

Year:  2009        PMID: 19669566      PMCID: PMC2660395          DOI: 10.1007/s10867-009-9126-3

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  19 in total

1.  Two-vibron bound states in alpha-helix proteins: the interplay between the intramolecular anharmonicity and the strong vibron-phonon coupling.

Authors:  V Pouthier
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2003-08-18

2.  Relaxation channels of two-vibron bound states in alpha-helix proteins.

Authors:  V Pouthier; C Falvo
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-04-29

3.  Direct observation of self-trapped vibrational states in alpha-helices.

Authors:  J Edler; R Pfister; V Pouthier; C Falvo; P Hamm
Journal:  Phys Rev Lett       Date:  2004-09-03       Impact factor: 9.161

4.  Self-trapping of the N-H vibrational mode in alpha-helical polypeptides.

Authors:  Dmitry V Tsivlin; Volkhard May
Journal:  J Chem Phys       Date:  2006-12-14       Impact factor: 3.488

5.  Semiclassical description of the nonlinear response of self-trapped vibrational excitations.

Authors:  Sander Woutersen
Journal:  J Chem Phys       Date:  2007-06-14       Impact factor: 3.488

6.  Incoherent neutron scattering in acetanilide and three deuterated derivatives.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1991-03-01

7.  Polarons in acetanilide.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1989-06-15

8.  Long-lived amide I vibrational modes in myoglobin.

Authors:  A Xie; L van Der Meer; W Hoff; R H Austin
Journal:  Phys Rev Lett       Date:  2000-06-05       Impact factor: 9.161

9.  Solitons and energy transfer along protein molecules.

Authors:  A S Davydov
Journal:  J Theor Biol       Date:  1977-05-21       Impact factor: 2.691

Review 10.  Vibrational spectroscopy and conformation of peptides, polypeptides, and proteins.

Authors:  S Krimm; J Bandekar
Journal:  Adv Protein Chem       Date:  1986
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  1 in total

1.  The Davydov/Scott model for energy storage and transport in proteins.

Authors:  Leonor Cruzeiro
Journal:  J Biol Phys       Date:  2009-02-19       Impact factor: 1.365

  1 in total

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