Literature DB >> 19669466

Kinetic model of mitochondrial Krebs cycle: unraveling the mechanism of salicylate hepatotoxic effects.

Ekaterina Mogilevskaya1, Oleg Demin, Igor Goryanin.   

Abstract

This paper studies the effect of salicylate on the energy metabolism of mitochondria using in silico simulations. A kinetic model of the mitochondrial Krebs cycle is constructed using information on the individual enzymes. Model parameters for the rate equations are estimated using in vitro experimental data from the literature. Enzyme concentrations are determined from data on respiration in mitochondrial suspensions containing glutamate and malate. It is shown that inhibition in succinate dehydrogenase and alpha-ketoglutarate dehydrogenase by salicylate contributes substantially to the cumulative inhibition of the Krebs cycle by salicylates. Uncoupling of oxidative phosphorylation has little effect and coenzyme A consumption in salicylates transformation processes has an insignificant effect on the rate of substrate oxidation in the Krebs cycle. It is found that the salicylate-inhibited Krebs cycle flux can be increased by flux redirection through addition of external glutamate and malate, and depletion in external alpha-ketoglutarate and glycine concentrations.

Entities:  

Year:  2006        PMID: 19669466      PMCID: PMC2651525          DOI: 10.1007/s10867-006-9015-y

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  48 in total

1.  The kinetics of enzyme-catalyzed reactions with two or more substrates or products. I. Nomenclature and rate equations.

Authors:  W W CLELAND
Journal:  Biochim Biophys Acta       Date:  1963-01-08

2.  The composition of the ketoglutarate dehydrogenase complex.

Authors:  V MASSEY
Journal:  Biochim Biophys Acta       Date:  1960-03-11

3.  Regulation of mitochondrial alpha-ketoglutarate metabolism by product inhibition at alpha-ketoglutarate dehydrogenase.

Authors:  C M Smith; J Bryla; J R Williamson
Journal:  J Biol Chem       Date:  1974-03-10       Impact factor: 5.157

4.  Fumarate reductase activity of bovine heart succinate-ubiquinone reductase. New assay system and overall properties of the reaction.

Authors:  V G Grivennikova; E V Gavrikova; A A Timoshin; A D Vinogradov
Journal:  Biochim Biophys Acta       Date:  1993-01-08

5.  Aspartate aminotransferase isozymes from rabbit liver. Purification and properties.

Authors:  S Kuramitsu; K Inoue; K Kondo; K Aki; H Kagamiyama
Journal:  J Biochem       Date:  1985-05       Impact factor: 3.387

6.  Regulation of volatile fatty acid uptake by mitochondrial acyl CoA synthetases of bovine liver.

Authors:  C A Ricks; R M Cook
Journal:  J Dairy Sci       Date:  1981-12       Impact factor: 4.034

7.  Computer simulation of metabolism in pyruvate-perfused rat heart. II. Krebs cycle.

Authors:  M C Kohn; M J Achs; D Garfinkel
Journal:  Am J Physiol       Date:  1979-09

8.  [Cooperative anti-tumor effect of aspirin and TNF-related apoptosis-inducing ligand].

Authors:  Xiao-an Li; Dian-chun Fang; Pei-ren Si; Ru-gang Zhang; Liu-qin Yang
Journal:  Zhonghua Gan Zang Bing Za Zhi       Date:  2003-11

Review 9.  Nonsteroidal anti-inflammatory drug-associated toxicity of the liver, lower gastrointestinal tract, and esophagus.

Authors:  D Bjorkman
Journal:  Am J Med       Date:  1998-11-02       Impact factor: 4.965

10.  The redox state of free nicotinamide-adenine dinucleotide in the cytoplasm and mitochondria of rat liver.

Authors:  D H Williamson; P Lund; H A Krebs
Journal:  Biochem J       Date:  1967-05       Impact factor: 3.857

View more
  15 in total

1.  Approaches to biosimulation of cellular processes.

Authors:  F J Bruggeman; H V Westerhoff
Journal:  J Biol Phys       Date:  2006-11-11       Impact factor: 1.365

Review 2.  The biochemistry of ketogenesis and its role in weight management, neurological disease and oxidative stress.

Authors:  Peter Andrew C McPherson; Jane McEneny
Journal:  J Physiol Biochem       Date:  2011-10-08       Impact factor: 4.158

3.  Alterations in lipid profile, oxidative stress and hepatic function in rat fed with saccharin and methyl-salicylates.

Authors:  Kamal Adel Amin; Hessah Mohammed AlMuzafar
Journal:  Int J Clin Exp Med       Date:  2015-04-15

4.  Global self-regulation of the cellular metabolic structure.

Authors:  Ildefonso M De la Fuente; Fernando Vadillo; Alberto Luís Pérez-Samartín; Martín-Blas Pérez-Pinilla; Joseba Bidaurrazaga; Antonio Vera-López
Journal:  PLoS One       Date:  2010-03-02       Impact factor: 3.240

Review 5.  Quantitative analysis of cellular metabolic dissipative, self-organized structures.

Authors:  Ildefonso Martínez de la Fuente
Journal:  Int J Mol Sci       Date:  2010-09-27       Impact factor: 5.923

6.  Uncoventional views on certain aspects of toxin-induced metabolic acidosis.

Authors:  Man S Oh
Journal:  Electrolyte Blood Press       Date:  2010-06-30

7.  DBSolve Optimum: a software package for kinetic modeling which allows dynamic visualization of simulation results.

Authors:  Nail M Gizzatkulov; Igor I Goryanin; Eugeny A Metelkin; Ekaterina A Mogilevskaya; Kirill V Peskov; Oleg V Demin
Journal:  BMC Syst Biol       Date:  2010-08-10

8.  The metabolic core and catalytic switches are fundamental elements in the self-regulation of the systemic metabolic structure of cells.

Authors:  Ildefonso M De la Fuente; Jesus M Cortes; Martin B Perez-Pinilla; Vicente Ruiz-Rodriguez; Juan Veguillas
Journal:  PLoS One       Date:  2011-11-18       Impact factor: 3.240

Review 9.  Self-Organization and Information Processing: From Basic Enzymatic Activities to Complex Adaptive Cellular Behavior.

Authors:  Ildefonso M De la Fuente; Luis Martínez; Jose Carrasco-Pujante; Maria Fedetz; José I López; Iker Malaina
Journal:  Front Genet       Date:  2021-05-21       Impact factor: 4.599

10.  Attractor metabolic networks.

Authors:  Ildefonso M De la Fuente; Jesus M Cortes; David A Pelta; Juan Veguillas
Journal:  PLoS One       Date:  2013-03-15       Impact factor: 3.240

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