Literature DB >> 19667755

Unraveling new roles for minor components of the E. coli RNA degradosome.

Vladimir R Kaberdin1, Sue Lin-Chao.   

Abstract

Endoribonuclease E, 3'-5' exoribonuclease polynucleotide phosphorylase, RhlB RNA helicase and enolase form a multienzyme complex (the "degradosome") playing an important role in RNA processing and decay in Escherichia coli. Although a number of proteins that occasionally co-purify with the E. coli degradosome in non-stoichiometric amounts were initially viewed as insignificant constituents of this complex, recent studies suggest that, in fact, some of these copurifying proteins are involved in modulation of degradosome composition, activity or specificity during bacterial adaptation to changing environments. Here we briefly review these findings and discuss their implications for understanding the multifaceted mechanisms controlling degradosome functions in vivo.

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Year:  2009        PMID: 19667755     DOI: 10.4161/rna.6.4.9320

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  11 in total

1.  Identification of genes essential for prey-independent growth of Bdellovibrio bacteriovorus HD100.

Authors:  Nicole Roschanski; Sven Klages; Richard Reinhardt; Michael Linscheid; Eckhard Strauch
Journal:  J Bacteriol       Date:  2011-01-28       Impact factor: 3.490

Review 2.  RNase E: at the interface of bacterial RNA processing and decay.

Authors:  George A Mackie
Journal:  Nat Rev Microbiol       Date:  2013-01       Impact factor: 60.633

3.  Enolase: a key player in the metabolism and a probable virulence factor of trypanosomatid parasites-perspectives for its use as a therapeutic target.

Authors:  Luisana Avilán; Melisa Gualdrón-López; Wilfredo Quiñones; Limari González-González; Véronique Hannaert; Paul A M Michels; Juan-Luis Concepción
Journal:  Enzyme Res       Date:  2011-04-07

4.  Physiological response to membrane protein overexpression in E. coli.

Authors:  Francesca Gubellini; Grégory Verdon; Nathan K Karpowich; Jon D Luff; Grégory Boël; Nils Gauthier; Samuel K Handelman; Sarah E Ades; John F Hunt
Journal:  Mol Cell Proteomics       Date:  2011-06-30       Impact factor: 5.911

5.  Characterizing the Escherichia coli O157:H7 proteome including protein associations with higher order assemblies.

Authors:  Rembert Pieper; Quanshun Zhang; David J Clark; Shih-Ting Huang; Moo-Jin Suh; John C Braisted; Samuel H Payne; Robert D Fleischmann; Scott N Peterson; Saul Tzipori
Journal:  PLoS One       Date:  2011-11-07       Impact factor: 3.240

6.  Archaeal Clusters of Orthologous Genes (arCOGs): An Update and Application for Analysis of Shared Features between Thermococcales, Methanococcales, and Methanobacteriales.

Authors:  Kira S Makarova; Yuri I Wolf; Eugene V Koonin
Journal:  Life (Basel)       Date:  2015-03-10

7.  Localization of Components of the RNA-Degrading Machine in Bacillus subtilis.

Authors:  Nora Cascante-Estepa; Katrin Gunka; Jörg Stülke
Journal:  Front Microbiol       Date:  2016-09-21       Impact factor: 5.640

8.  Recognition of the 70S ribosome and polysome by the RNA degradosome in Escherichia coli.

Authors:  Yi-Chun Tsai; Dijun Du; Lilianha Domínguez-Malfavón; Daniela Dimastrogiovanni; Jonathan Cross; Anastasia J Callaghan; Jaime García-Mena; Ben F Luisi
Journal:  Nucleic Acids Res       Date:  2012-08-25       Impact factor: 16.971

Review 9.  Initiation of mRNA decay in bacteria.

Authors:  Soumaya Laalami; Léna Zig; Harald Putzer
Journal:  Cell Mol Life Sci       Date:  2013-09-25       Impact factor: 9.261

10.  Dual role of transcription and transcript stability in the regulation of gene expression in Escherichia coli cells cultured on glucose at different growth rates.

Authors:  Thomas Esquerré; Sandrine Laguerre; Catherine Turlan; Agamemnon J Carpousis; Laurence Girbal; Muriel Cocaign-Bousquet
Journal:  Nucleic Acids Res       Date:  2013-11-15       Impact factor: 16.971

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