Literature DB >> 19665394

Microhydration of protonated nucleic acid bases and protonated nucleosides in the gas phase.

Henryk Wincel1.   

Abstract

Thermochemical data, DeltaH(o)(n), DeltaS(o)(n), and DeltaG(o)(n), for the hydration of protonated nucleic acid bases and protonated nucleosides have been experimentally studied by equilibrium measurements using an electrospray high-pressure mass spectrometer equipped with a pulsed ion-beam reaction chamber. For protonated nucleobases the hydration enthalpies were found to be similar for all studied systems and varied between 12.4-13.1 kcal/mol for the first and 11.2-11.5 kcal/mol for the second water molecule. While for protonated nucleosides the water binding enthalpies (11.7-13.3 kcal/mol) are very close to those for protonated nucleobases, the entropy values are "more negative." The structural and energetic aspects of hydrated ions are discussed in conjunction with the available theoretical data.

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Year:  2009        PMID: 19665394     DOI: 10.1016/j.jasms.2009.06.017

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN: 1044-0305            Impact factor:   3.109


  17 in total

1.  Proton affinity of uracil. A computational study of protonation sites.

Authors:  J K Wolken; F Ture ek
Journal:  J Am Soc Mass Spectrom       Date:  2000-12       Impact factor: 3.109

2.  Hydration of DNA bases: analysis of crystallographic data.

Authors:  B Schneider; D Cohen; H M Berman
Journal:  Biopolymers       Date:  1992-07       Impact factor: 2.505

3.  Comprehensive study of the effects of methylation on tautomeric equilibria of nucleic acid bases.

Authors:  Gareth K Forde; Aviane E Forde; Glake Hill; Adrian Ford; Alejandro Nazario; Jerzy Leszczynski
Journal:  J Phys Chem B       Date:  2006-08-10       Impact factor: 2.991

4.  Investigation of proton transport tautomerism in clusters of protonated nucleic acid bases (cytosine, uracil, thymine, and adenine) and ammonia by high-pressure mass spectrometry and ab initio calculations.

Authors:  Ronghu Wu; Terry B McMahon
Journal:  J Am Chem Soc       Date:  2007-01-24       Impact factor: 15.419

5.  Infrared spectra of protonated uracil, thymine and cytosine.

Authors:  Jean-Yves Salpin; Sébastien Guillaumont; Jeanine Tortajada; Luke MacAleese; Joël Lemaire; Philippe Maitre
Journal:  Chemphyschem       Date:  2007-10-22       Impact factor: 3.102

6.  Gas-phase protonation thermochemistry of adenosine.

Authors:  David Touboul; Guy Bouchoux; Renato Zenobi
Journal:  J Phys Chem B       Date:  2008-08-23       Impact factor: 2.991

7.  Tautomerism of uracil probed via infrared spectroscopy of singly hydrated protonated uracil.

Authors:  Joost M Bakker; Rajeev K Sinha; Thierry Besson; Maurizio Brugnara; Paolo Tosi; Jean-Yves Salpin; Philippe Maître
Journal:  J Phys Chem A       Date:  2008-12-04       Impact factor: 2.781

8.  Hydration energies of deprotonated amino acids from gas phase equilibria measurements.

Authors:  Henryk Wincel
Journal:  J Am Soc Mass Spectrom       Date:  2008-05-28       Impact factor: 3.109

9.  Correlated ab initio study of nucleic acid bases and their tautomers in the gas phase, in a microhydrated environment and in aqueous solution. Part 4. Uracil and thymine.

Authors:  Jaroslav Rejnek; Michal Hanus; Martin Kabelác; Filip Ryjácek; Pavel Hobza
Journal:  Phys Chem Chem Phys       Date:  2005-05-07       Impact factor: 3.676

10.  Simulation of the first hydration shell of nucleosides D4T and thymidine: structures obtained using MP2 and DFT methods.

Authors:  M Alcolea Palafox; N Iza; M de la Fuente; R Navarro
Journal:  J Phys Chem B       Date:  2009-02-26       Impact factor: 2.991

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  2 in total

1.  Hydration energies of protonated and sodiated thiouracils.

Authors:  Henryk Wincel
Journal:  J Am Soc Mass Spectrom       Date:  2014-10-01       Impact factor: 3.109

2.  Microhydration of Deprotonated Nucleobases.

Authors:  Henryk Wincel
Journal:  J Am Soc Mass Spectrom       Date:  2016-05-13       Impact factor: 3.109

  2 in total

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