Literature DB >> 18998657

Tautomerism of uracil probed via infrared spectroscopy of singly hydrated protonated uracil.

Joost M Bakker1, Rajeev K Sinha, Thierry Besson, Maurizio Brugnara, Paolo Tosi, Jean-Yves Salpin, Philippe Maître.   

Abstract

Tautomerism of the nucleobase uracil is characterized in the gas phase through IR photodissociation spectroscopy of singly hydrated protonated uracil created with tandem mass spectrometric methods in a commercially available Fourier transform ion cyclotron resonance mass spectrometer. Protonated uracil ions generated by electrospray ionization are re-solvated in a low-pressure collision cell filled with a mixture of water vapor seeded in argon. Their structure is investigated by IR photodissociation spectroscopy in the NH and OH stretching region (2500-3800 cm(-1)) with a tabletop IR laser source and in the 1000-2000 cm(-1) range with a free-electron laser. In both regions the IR photodissociation spectrum exhibits well-resolved spectral signatures that point to the presence of two different types of structure for monohydrated protonated uracil, which result from the two lowest-energy tautomers of uracil. Ab initio calculations confirm that no water-catalyzed tautomerization occurs during the re-solvation process, indicating that the two protonated forms of uracil directly originate from the electrospray process.

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Year:  2008        PMID: 18998657     DOI: 10.1021/jp806396t

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  9 in total

1.  Diagnosing the protonation site of b2 peptide fragment ions using IRMPD in the X-H (X = O, N, and C) stretching region.

Authors:  Rajeev K Sinha; Undine Erlekam; Benjamin J Bythell; Béla Paizs; Philippe Maître
Journal:  J Am Soc Mass Spectrom       Date:  2011-06-21       Impact factor: 3.109

2.  Microhydration of protonated nucleic acid bases and protonated nucleosides in the gas phase.

Authors:  Henryk Wincel
Journal:  J Am Soc Mass Spectrom       Date:  2009-07-10       Impact factor: 3.109

3.  Gas phase structure of micro-hydrated [Mn(ClO4)]+ and [Mn2(ClO4)3]+ ions probed by infrared spectroscopy.

Authors:  Rajeev K Sinha; Edith Nicol; Vincent Steinmetz; Philippe Maître
Journal:  J Am Soc Mass Spectrom       Date:  2010-02-11       Impact factor: 3.109

4.  IRMPD Action Spectroscopy, ER-CID Experiments, and Theoretical Studies of Sodium Cationized Thymidine and 5-Methyluridine: Kinetic Trapping During the ESI Desolvation Process Preserves the Solution Structure of [Thd+Na]<sup/>.

Authors:  Y Zhu; H A Roy; N A Cunningham; S F Strobehn; J Gao; M U Munshi; G Berden; J Oomens; M T Rodgers
Journal:  J Am Soc Mass Spectrom       Date:  2017-08-23       Impact factor: 3.109

5.  Structure of sodiated octa-glycine: IRMPD spectroscopy and molecular modeling.

Authors:  David Semrouni; O Petru Balaj; Florent Calvo; Catarina F Correia; Carine Clavaguéra; Gilles Ohanessian
Journal:  J Am Soc Mass Spectrom       Date:  2010-02-01       Impact factor: 3.109

6.  Hydration energies of protonated and sodiated thiouracils.

Authors:  Henryk Wincel
Journal:  J Am Soc Mass Spectrom       Date:  2014-10-01       Impact factor: 3.109

7.  Structural and Energetic Effects of O2'-Ribose Methylation of Protonated Pyrimidine Nucleosides.

Authors:  C C He; L A Hamlow; Y Zhu; Y-W Nei; L Fan; C P McNary; P Maître; V Steinmetz; B Schindler; I Compagnon; P B Armentrout; M T Rodgers
Journal:  J Am Soc Mass Spectrom       Date:  2019-08-21       Impact factor: 3.109

8.  Direct observation of ground-state lactam-lactim tautomerization using temperature-jump transient 2D IR spectroscopy.

Authors:  Chunte Sam Peng; Carlos R Baiz; Andrei Tokmakoff
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-20       Impact factor: 11.205

9.  Infrared Multiple Photon Dissociation Spectroscopy of Cationized Canavanine: Side-Chain Substitution Influences Gas-Phase Zwitterion Formation.

Authors:  Zachary M Smith; Vincent Steinmetz; Jonathan Martens; Jos Oomens; John C Poutsma
Journal:  Int J Mass Spectrom       Date:  2017-09-04       Impact factor: 1.986

  9 in total

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