Literature DB >> 19659247

Two-component genetic switch as a synthetic module with tunable stability.

C-M Ghim1, E Almaas.   

Abstract

Despite stochastic fluctuations, some genetic switches are able to retain their expression states through multiple cell divisions, providing epigenetic memory. We propose a novel rationale for tuning the functional stability of a simple synthetic gene switch through protein dimerization. Introducing an approximation scheme to access long-time stochastic dynamics of multiple-component gene circuits, we find that the spontaneous switching rate may exhibit greater than 8 orders of magnitude variation. The manipulation of the circuit's biochemical properties offers a practical strategy for designing robust epigenetic memory with synthetic circuits.

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Year:  2009        PMID: 19659247     DOI: 10.1103/PhysRevLett.103.028101

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  7 in total

Review 1.  Building synthetic memory.

Authors:  Mara C Inniss; Pamela A Silver
Journal:  Curr Biol       Date:  2013-09-09       Impact factor: 10.834

2.  Molecular level dynamics of genetic oscillator--the effect of protein-protein interaction.

Authors:  H Song; Z Yuan; J Zhang; T Zhou
Journal:  Eur Phys J E Soft Matter       Date:  2011-08-08       Impact factor: 1.890

Review 3.  Synthetic circuits, devices and modules.

Authors:  Hong Zhang; Taijiao Jiang
Journal:  Protein Cell       Date:  2010-12-10       Impact factor: 14.870

4.  Architecture-dependent robustness in a class of multiple positive feedback loops.

Authors:  Changhong Shi; Han-Xiong Li; Tianshou Zhou
Journal:  IET Syst Biol       Date:  2013-02       Impact factor: 1.615

5.  Genetic noise control via protein oligomerization.

Authors:  Cheol-Min Ghim; Eivind Almaas
Journal:  BMC Syst Biol       Date:  2008-11-03

6.  Hypothetical biomolecular probe based on a genetic switch with tunable symmetry and stability.

Authors:  Nikolay Martyushenko; Sigurd Hagen Johansen; Cheol-Min Ghim; Eivind Almaas
Journal:  BMC Syst Biol       Date:  2016-06-06

7.  Selected heterozygosity at cis-regulatory sequences increases the expression homogeneity of a cell population in humans.

Authors:  Min Kyung Sung; Juneil Jang; Kang Seon Lee; Cheol-Min Ghim; Jung Kyoon Choi
Journal:  Genome Biol       Date:  2016-07-28       Impact factor: 13.583

  7 in total

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