Literature DB >> 19654731

Quantifying noise in optical tweezers by allan variance.

Fabian Czerwinski1, Andrew C Richardson, Lene B Oddershede.   

Abstract

Much effort is put into minimizing noise in optical tweezers experiments because noise and drift can mask fundamental behaviours of, e.g., single molecule assays. Various initiatives have been taken to reduce or eliminate noise but it has been difficult to quantify their effect. We propose to use Allan variance as a simple and efficient method to quantify noise in optical tweezers setups.We apply the method to determine the optimal measurement time, frequency, and detection scheme, and quantify the effect of acoustic noise in the lab. The method can also be used on-the-fly for determining optimal parameters of running experiments.

Mesh:

Year:  2009        PMID: 19654731     DOI: 10.1364/oe.17.013255

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  20 in total

1.  Power spectrum and Allan variance methods for calibrating single-molecule video-tracking instruments.

Authors:  Bob M Lansdorp; Omar A Saleh
Journal:  Rev Sci Instrum       Date:  2012-02       Impact factor: 1.523

2.  Defining the limits of single-molecule FRET resolution in TIRF microscopy.

Authors:  Seamus J Holden; Stephan Uphoff; Johannes Hohlbein; David Yadin; Ludovic Le Reste; Oliver J Britton; Achillefs N Kapanidis
Journal:  Biophys J       Date:  2010-11-03       Impact factor: 4.033

3.  Magnetic torque tweezers: measuring torsional stiffness in DNA and RecA-DNA filaments.

Authors:  Jan Lipfert; Jacob W J Kerssemakers; Tessa Jager; Nynke H Dekker
Journal:  Nat Methods       Date:  2010-10-17       Impact factor: 28.547

4.  High Spatiotemporal-Resolution Magnetic Tweezers: Calibration and Applications for DNA Dynamics.

Authors:  David Dulin; Tao Ju Cui; Jelmer Cnossen; Margreet W Docter; Jan Lipfert; Nynke H Dekker
Journal:  Biophys J       Date:  2015-11-17       Impact factor: 4.033

5.  Comparative study of methods to calibrate the stiffness of a single-beam gradient-force optical tweezers over various laser trapping powers.

Authors:  Mohammad Sarshar; Winson T Wong; Bahman Anvari
Journal:  J Biomed Opt       Date:  2014       Impact factor: 3.170

6.  Tethered particle analysis of supercoiled circular DNA using peptide nucleic acid handles.

Authors:  Kamilla Norregaard; Magnus Andersson; Peter Eigil Nielsen; Stanley Brown; Lene B Oddershede
Journal:  Nat Protoc       Date:  2014-08-21       Impact factor: 13.491

7.  Invincible DNA tethers: covalent DNA anchoring for enhanced temporal and force stability in magnetic tweezers experiments.

Authors:  Richard Janissen; Bojk A Berghuis; David Dulin; Max Wink; Theo van Laar; Nynke H Dekker
Journal:  Nucleic Acids Res       Date:  2014-08-19       Impact factor: 16.971

8.  Quantifying the Precision of Single-Molecule Torque and Twist Measurements Using Allan Variance.

Authors:  Maarten M van Oene; Seungkyu Ha; Tessa Jager; Mina Lee; Francesco Pedaci; Jan Lipfert; Nynke H Dekker
Journal:  Biophys J       Date:  2018-04-24       Impact factor: 4.033

9.  The Nanomechanical Properties of Lactococcus lactis Pili Are Conditioned by the Polymerized Backbone Pilin.

Authors:  Mickaël Castelain; Marie-Pierre Duviau; Alexis Canette; Philippe Schmitz; Pascal Loubière; Muriel Cocaign-Bousquet; Jean-Christophe Piard; Muriel Mercier-Bonin
Journal:  PLoS One       Date:  2016-03-24       Impact factor: 3.240

10.  High-Performance Image-Based Measurements of Biological Forces and Interactions in a Dual Optical Trap.

Authors:  Jessica L Killian; James T Inman; Michelle D Wang
Journal:  ACS Nano       Date:  2018-11-20       Impact factor: 15.881

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