Literature DB >> 19654609

Inferring introduction routes of invasive species using approximate Bayesian computation on microsatellite data.

T Guillemaud1, M A Beaumont, M Ciosi, J-M Cornuet, A Estoup.   

Abstract

Determining the routes of introduction provides not only information about the history of an invasion process, but also information about the origin and construction of the genetic composition of the invading population. It remains difficult, however, to infer introduction routes from molecular data because of a lack of appropriate methods. We evaluate here the use of an approximate Bayesian computation (ABC) method for estimating the probabilities of introduction routes of invasive populations based on microsatellite data. We considered the crucial case of a single source population from which two invasive populations originated either serially from a single introduction event or from two independent introduction events. Using simulated datasets, we found that the method gave correct inferences and was robust to many erroneous beliefs. The method was also more efficient than traditional methods based on raw values of statistics such as assignment likelihood or pairwise F(ST). We illustrate some of the features of our ABC method, using real microsatellite datasets obtained for invasive populations of the western corn rootworm, Diabrotica virgifera virgifera. Most computations were performed with the DIYABC program (http://www1.montpellier.inra.fr/CBGP/diyabc/).

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Year:  2010        PMID: 19654609     DOI: 10.1038/hdy.2009.92

Source DB:  PubMed          Journal:  Heredity (Edinb)        ISSN: 0018-067X            Impact factor:   3.821


  42 in total

1.  Population divergence with or without admixture: selecting models using an ABC approach.

Authors:  V C Sousa; M A Beaumont; P Fernandes; M M Coelho; L Chikhi
Journal:  Heredity (Edinb)       Date:  2011-12-07       Impact factor: 3.821

2.  Splendor and misery of indirect measures of migration and gene flow.

Authors:  G Guillot
Journal:  Heredity (Edinb)       Date:  2010-05-12       Impact factor: 3.821

3.  Coestimation of recombination, substitution and molecular adaptation rates by approximate Bayesian computation.

Authors:  J S Lopes; M Arenas; D Posada; M A Beaumont
Journal:  Heredity (Edinb)       Date:  2013-10-23       Impact factor: 3.821

4.  Lack of confidence in approximate Bayesian computation model choice.

Authors:  Christian P Robert; Jean-Marie Cornuet; Jean-Michel Marin; Natesh S Pillai
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-29       Impact factor: 11.205

5.  Using ABC and microsatellite data to detect multiple introductions of invasive species from a single source.

Authors:  A Benazzo; S Ghirotto; S T Vilaça; S Hoban
Journal:  Heredity (Edinb)       Date:  2015-04-29       Impact factor: 3.821

6.  Choice of summary statistic weights in approximate Bayesian computation.

Authors:  Hsuan Jung; Paul Marjoram
Journal:  Stat Appl Genet Mol Biol       Date:  2011-09-27

7.  Understanding the recent colonization history of a plant pathogenic fungus using population genetic tools and Approximate Bayesian Computation.

Authors:  B Barrès; J Carlier; M Seguin; C Fenouillet; C Cilas; V Ravigné
Journal:  Heredity (Edinb)       Date:  2012-07-25       Impact factor: 3.821

8.  Contrasted invasion processes imprint the genetic structure of an invasive scale insect across southern Europe.

Authors:  C Kerdelhué; T Boivin; C Burban
Journal:  Heredity (Edinb)       Date:  2014-05-21       Impact factor: 3.821

9.  Bridgehead effect in the worldwide invasion of the biocontrol harlequin ladybird.

Authors:  Eric Lombaert; Thomas Guillemaud; Jean-Marie Cornuet; Thibaut Malausa; Benoît Facon; Arnaud Estoup
Journal:  PLoS One       Date:  2010-03-17       Impact factor: 3.240

10.  Insights into the Introduction History and Population Genetic Dynamics of the Nile Monitor (Varanus niloticus) in Florida.

Authors:  Jared P Wood; Stephanie A Dowell; Todd S Campbell; Robert B Page
Journal:  J Hered       Date:  2016-03-12       Impact factor: 2.645

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