Literature DB >> 19652840

Calculation of fluorine chemical shift tensors for the interpretation of oriented (19)F-NMR spectra of gramicidin A in membranes.

Ulrich Sternberg1, Marco Klipfel, Stephan L Grage, Raiker Witter, Anne S Ulrich.   

Abstract

A semi-empirical method for the prediction of chemical shifts, based on bond polarization theory, has recently been introduced for (13)C. Here, we extended this approach to calculate the (19)F chemical shift tensors of fluorine bound to aromatic rings and in aliphatic CF(3) groups. For the necessary parametrization, ab initio chemical shift calculations were performed at the MP2 level for a set of fluorinated molecules including tryptophan. The bond polarization parameters obtained were used to calculate the (19)F chemical shift tensors for several crystalline molecules, and to reference the calculated values on a chemical shift scale relative to CFCl(3). As a first biophysical application, we examined the distribution of conformations of a (19)F-labeled tryptophan side chain in the membrane-bound ion channel peptide, gramicidin A. The fluorine chemical shift tensors were calculated from snapshots of a molecular dynamics simulation employing the (19)F-parametrized bond polarization theory. In this MD simulation, published (2)H quadrupolar and (15)N-(1)H dipolar couplings of the indole ring were used as orientational constraints to determine the conformational distribution of the 5F-Trp(13) side chain. These conformations were then used to interpret the spectra of (19)F-labeled gramicidin A in fluid and gel phase lipid bilayers.

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Year:  2009        PMID: 19652840     DOI: 10.1039/b908236k

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  9 in total

1.  Molecular dynamics simulations on PGLa using NMR orientational constraints.

Authors:  Ulrich Sternberg; Raiker Witter
Journal:  J Biomol NMR       Date:  2015-09-10       Impact factor: 2.835

2.  Ex Vivo Analysis of Tryptophan Metabolism Using 19F NMR.

Authors:  Robert J Tombari; Carla M Saunders; Chun-Yi Wu; Lee E Dunlap; Dean J Tantillo; David E Olson
Journal:  ACS Chem Biol       Date:  2019-08-26       Impact factor: 5.100

3.  Evaluating electronic structure methods for accurate calculation of 19 F chemical shifts in fluorinated amino acids.

Authors:  Jayangika N Dahanayake; Chandana Kasireddy; Jonathan M Ellis; Derek Hildebrandt; Olivia A Hull; Joseph P Karnes; Dylan Morlan; Katie R Mitchell-Koch
Journal:  J Comput Chem       Date:  2017-08-21       Impact factor: 3.376

4.  Investigation of backbone dynamics and local geometry of bio-molecules using calculated NMR chemical shifts and anisotropies.

Authors:  Ulrich Sternberg; Raiker Witter
Journal:  J Biomol NMR       Date:  2019-10-23       Impact factor: 2.835

5.  Demystifying fluorine chemical shifts: electronic structure calculations address origins of seemingly anomalous (19)F-NMR spectra of fluorohistidine isomers and analogues.

Authors:  Chandana Kasireddy; James G Bann; Katie R Mitchell-Koch
Journal:  Phys Chem Chem Phys       Date:  2015-11-11       Impact factor: 3.676

6.  Prediction of 19F NMR Chemical Shifts for Fluorinated Aromatic Compounds.

Authors:  Carla Saunders; Mohammad B Khaled; Jimmie D Weaver; Dean J Tantillo
Journal:  J Org Chem       Date:  2018-02-26       Impact factor: 4.354

7.  The Biophysical Probes 2-fluorohistidine and 4-fluorohistidine: Spectroscopic Signatures and Molecular Properties.

Authors:  Chandana Kasireddy; Jonathan M Ellis; James G Bann; Katie R Mitchell-Koch
Journal:  Sci Rep       Date:  2017-02-15       Impact factor: 4.379

8.  Configuration determination by residual dipolar couplings: accessing the full conformational space by molecular dynamics with tensorial constraints.

Authors:  Pavleta Tzvetkova; Ulrich Sternberg; Thomas Gloge; Armando Navarro-Vázquez; Burkhard Luy
Journal:  Chem Sci       Date:  2019-07-29       Impact factor: 9.825

9.  Predicting 19 F NMR Chemical Shifts: A Combined Computational and Experimental Study of a Trypanosomal Oxidoreductase-Inhibitor Complex.

Authors:  Johannes C B Dietschreit; Annika Wagner; T Anh Le; Philipp Klein; Hermann Schindelin; Till Opatz; Bernd Engels; Ute A Hellmich; Christian Ochsenfeld
Journal:  Angew Chem Int Ed Engl       Date:  2020-05-25       Impact factor: 15.336

  9 in total

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