Literature DB >> 19652647

The evolutionary significance of ancient genome duplications.

Yves Van de Peer1, Steven Maere, Axel Meyer.   

Abstract

Many organisms are currently polyploid, or have a polyploid ancestry and now have secondarily 'diploidized' genomes. This finding is surprising because retained whole-genome duplications (WGDs) are exceedingly rare, suggesting that polyploidy is usually an evolutionary dead end. We argue that ancient genome doublings could probably have survived only under very specific conditions, but that, whenever established, they might have had a pronounced impact on species diversification, and led to an increase in biological complexity and the origin of evolutionary novelties.

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Year:  2009        PMID: 19652647     DOI: 10.1038/nrg2600

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  98 in total

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Authors:  Luca Comai
Journal:  Nat Rev Genet       Date:  2005-11       Impact factor: 53.242

2.  Modeling gene and genome duplications in eukaryotes.

Authors:  Steven Maere; Stefanie De Bodt; Jeroen Raes; Tineke Casneuf; Marc Van Montagu; Martin Kuiper; Yves Van de Peer
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-30       Impact factor: 11.205

3.  The amphioxus genome illuminates vertebrate origins and cephalochordate biology.

Authors:  Linda Z Holland; Ricard Albalat; Kaoru Azumi; Elia Benito-Gutiérrez; Matthew J Blow; Marianne Bronner-Fraser; Frederic Brunet; Thomas Butts; Simona Candiani; Larry J Dishaw; David E K Ferrier; Jordi Garcia-Fernàndez; Jeremy J Gibson-Brown; Carmela Gissi; Adam Godzik; Finn Hallböök; Dan Hirose; Kazuyoshi Hosomichi; Tetsuro Ikuta; Hidetoshi Inoko; Masanori Kasahara; Jun Kasamatsu; Takeshi Kawashima; Ayuko Kimura; Masaaki Kobayashi; Zbynek Kozmik; Kaoru Kubokawa; Vincent Laudet; Gary W Litman; Alice C McHardy; Daniel Meulemans; Masaru Nonaka; Robert P Olinski; Zeev Pancer; Len A Pennacchio; Mario Pestarino; Jonathan P Rast; Isidore Rigoutsos; Marc Robinson-Rechavi; Graeme Roch; Hidetoshi Saiga; Yasunori Sasakura; Masanobu Satake; Yutaka Satou; Michael Schubert; Nancy Sherwood; Takashi Shiina; Naohito Takatori; Javier Tello; Pavel Vopalensky; Shuichi Wada; Anlong Xu; Yuzhen Ye; Keita Yoshida; Fumiko Yoshizaki; Jr-Kai Yu; Qing Zhang; Christian M Zmasek; Pieter J de Jong; Kazutoyo Osoegawa; Nicholas H Putnam; Daniel S Rokhsar; Noriyuki Satoh; Peter W H Holland
Journal:  Genome Res       Date:  2008-06-18       Impact factor: 9.043

4.  The evolutionary dynamics of polyploid plants: origins, establishment and persistence.

Authors:  J D Thompson; R Lumaret
Journal:  Trends Ecol Evol       Date:  1992-09       Impact factor: 17.712

5.  Molecular evidence for an ancient duplication of the entire yeast genome.

Authors:  K H Wolfe; D C Shields
Journal:  Nature       Date:  1997-06-12       Impact factor: 49.962

6.  The spandrels of San Marco and the Panglossian paradigm: a critique of the adaptationist programme.

Authors:  S J Gould; R C Lewontin
Journal:  Proc R Soc Lond B Biol Sci       Date:  1979-09-21

7.  Polyploidy and angiosperm diversification.

Authors:  Douglas E Soltis; Victor A Albert; Jim Leebens-Mack; Charles D Bell; Andrew H Paterson; Chunfang Zheng; David Sankoff; Claude W Depamphilis; P Kerr Wall; Pamela S Soltis
Journal:  Am J Bot       Date:  2009-01       Impact factor: 3.844

8.  Phylogenetic timing of the fish-specific genome duplication correlates with the diversification of teleost fish.

Authors:  Simone Hoegg; Henner Brinkmann; John S Taylor; Axel Meyer
Journal:  J Mol Evol       Date:  2004-08       Impact factor: 2.395

Review 9.  From 2R to 3R: evidence for a fish-specific genome duplication (FSGD).

Authors:  Axel Meyer; Yves Van de Peer
Journal:  Bioessays       Date:  2005-09       Impact factor: 4.345

10.  Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution.

Authors:  Guillaume Blanc; Kenneth H Wolfe
Journal:  Plant Cell       Date:  2004-06-18       Impact factor: 11.277

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  393 in total

1.  Characterization of mononuclear phagocytic cells in medaka fish transgenic for a cxcr3a:gfp reporter.

Authors:  Narges Aghaallaei; Baubak Bajoghli; Heinz Schwarz; Michael Schorpp; Thomas Boehm
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-04       Impact factor: 11.205

Review 2.  Morphological evolution in land plants: new designs with old genes.

Authors:  Nuno D Pires; Liam Dolan
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2012-02-19       Impact factor: 6.237

3.  Extensive chromosomal variation in a recently formed natural allopolyploid species, Tragopogon miscellus (Asteraceae).

Authors:  Michael Chester; Joseph P Gallagher; V Vaughan Symonds; Ana Veruska Cruz da Silva; Evgeny V Mavrodiev; Andrew R Leitch; Pamela S Soltis; Douglas E Soltis
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-06       Impact factor: 11.205

Review 4.  The more the better? The role of polyploidy in facilitating plant invasions.

Authors:  Mariska te Beest; Johannes J Le Roux; David M Richardson; Anne K Brysting; Jan Suda; Magdalena Kubesová; Petr Pysek
Journal:  Ann Bot       Date:  2011-10-31       Impact factor: 4.357

5.  Whole-genome duplications spurred the functional diversification of the globin gene superfamily in vertebrates.

Authors:  Federico G Hoffmann; Juan C Opazo; Jay F Storz
Journal:  Mol Biol Evol       Date:  2011-09-30       Impact factor: 16.240

6.  Evolution of double positive autoregulatory feedback loops in CYCLOIDEA2 clade genes is associated with the origin of floral zygomorphy.

Authors:  Xia Yang; Hong-Bo Pang; Bo-Ling Liu; Zhi-Jing Qiu; Qiu Gao; Lai Wei; Yang Dong; Yin-Zheng Wang
Journal:  Plant Cell       Date:  2012-05-30       Impact factor: 11.277

Review 7.  Origins, evolution, and phenotypic impact of new genes.

Authors:  Henrik Kaessmann
Journal:  Genome Res       Date:  2010-07-22       Impact factor: 9.043

8.  Genome-wide identification, phylogeny, and gonadal expression of fox genes in Nile tilapia, Oreochromis niloticus.

Authors:  Jing Yuan; Wenjing Tao; Yunying Cheng; Baofeng Huang; Deshou Wang
Journal:  Fish Physiol Biochem       Date:  2014-02-14       Impact factor: 2.794

9.  Production of diploid male gametes in Arabidopsis by cold-induced destabilization of postmeiotic radial microtubule arrays.

Authors:  Nico De Storme; Gregory P Copenhaver; Danny Geelen
Journal:  Plant Physiol       Date:  2012-10-24       Impact factor: 8.340

10.  Duplicated TLR5 of zebrafish functions as a heterodimeric receptor.

Authors:  Carlos G P Voogdt; Jaap A Wagenaar; Jos P M van Putten
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-19       Impact factor: 11.205

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