Literature DB >> 19652351

Crystallization and preliminary X-ray analysis of AAMS amidohydrolase, the final enzyme in degradation pathway I of pyridoxine.

Jun Kobayashi1, Hiromi Yoshida, Huy Nhat Chu, Yu Yoshikane, Shigehiro Kamitori, Toshiharu Yagi.   

Abstract

alpha-(N-Acetylaminomethylene)succinic acid (AAMS) amidohydrolase from Mesorhizobium loti MAFF303099, which is involved in a degradation pathway of vitamin B(6) and catalyzes the degradation of AAMS to acetic acid, ammonia, carbon dioxide and succinic semialdehyde, has been overexpressed in Escherichia coli. To elucidate the reaction mechanism based on the tertiary structure, the recombinant enzyme was purified and crystallized by the sitting-drop vapour-diffusion method using PEG 8000 as precipitant. A crystal of the enzyme belonged to the monoclinic space group C2, with unit-cell parameters a = 393.2, b = 58.3, c = 98.9 A, beta = 103.4 degrees , and diffraction data were collected to 2.7 A resolution. The V(M) value and calculation of the self-rotation function suggested that three dimers with a threefold symmetry were possibly present in the asymmetric unit.

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Year:  2009        PMID: 19652351      PMCID: PMC2720345          DOI: 10.1107/S1744309109026864

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  7 in total

1.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

2.  PLP catabolism: identification of the 2-(Acetamidomethylene)succinate hydrolase gene in Mesorhizobium loti MAFF303099.

Authors:  Tathagata Mukherjee; David G Hilmey; Tadhg P Begley
Journal:  Biochemistry       Date:  2008-05-14       Impact factor: 3.162

3.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

4.  The bacterial oxidation of vitamin B6. 8. Enzymatic breakdown of alpha-(N-acetylaminomethylene) succinic acid.

Authors:  E J Nyns; D Zach; E E Snell
Journal:  J Biol Chem       Date:  1969-05-25       Impact factor: 5.157

5.  Enzymes of vitamin B6 degradation. Purification and properties of two N-acetylamidohydrolases.

Authors:  M S Huynh; E E Snell
Journal:  J Biol Chem       Date:  1985-02-25       Impact factor: 5.157

6.  Enzymes of vitamin B6 degradation. Purification and properties of 5-pyridoxic-acid oxygenase from Arthrobacter sp.

Authors:  M J Nelson; E E Snell
Journal:  J Biol Chem       Date:  1986-11-15       Impact factor: 5.157

7.  Gene identification and characterization of the pyridoxine degradative enzyme alpha-(N-acetylaminomethylene)succinic acid amidohydrolase from Mesorhizobium loti MAFF303099.

Authors:  Baiqiang Yuan; Nana Yokochi; Yu Yoshikane; Kouhei Ohnishi; Fei Ge; Toshiharu Yagi
Journal:  J Nutr Sci Vitaminol (Tokyo)       Date:  2008-06       Impact factor: 2.000

  7 in total

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