Literature DB >> 19651047

Comparison of methods for characterizing nonideal solute self-association by sedimentation equilibrium.

David J Scott1, Donald J Winzor.   

Abstract

We have examined in detail analytical solutions of expressions for sedimentation equilibrium in the analytical ultracentrifuge to describe self-association under nonideal conditions. We find that those containing the radial dependence of total solute concentration that incorporate the Adams-Fujita assumption for composition-dependence of activity coefficients reveal potential shortcomings for characterizing such systems. Similar deficiencies are shown in the use of the NONLIN software incorporating the same assumption about the interrelationship between activity coefficients for monomer and polymer species. These difficulties can be overcome by iterative analyses incorporating expressions for the composition-dependence of activity coefficients predicted by excluded volume considerations. A recommendation is therefore made for the replacement of current software packages by programs that incorporate rigorous statistical-mechanical allowance for thermodynamic nonideality in sedimentation equilibrium distributions reflecting solute self-association.

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Year:  2009        PMID: 19651047      PMCID: PMC2718172          DOI: 10.1016/j.bpj.2009.05.028

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  15 in total

1.  Analysis of sedimentation equilibrium distributions reflecting nonideal macromolecular associations.

Authors:  P R Wills; M P Jacobsen; D J Winzor
Journal:  Biophys J       Date:  2000-10       Impact factor: 4.033

2.  Studies of solute self-association by sedimentation equilibrium: allowance for effects of thermodynamic non-ideality beyond the consequences of nearest-neighbor interactions.

Authors:  P R Wills; D J Winzor
Journal:  Biophys Chem       Date:  2001-07-24       Impact factor: 2.352

3.  EQUILIBRIUM ULTRACENTRIFUGATION OF DILUTE SOLUTIONS.

Authors:  D A YPHANTIS
Journal:  Biochemistry       Date:  1964-03       Impact factor: 3.162

4.  Sedimentation equilibrium in a solution containing an arbitrary number of solute species at arbitrary concentrations: theory and application to concentrated solutions of ribonuclease.

Authors:  Silvia Zorrilla; Mercedes Jiménez; Pilar Lillo; Germán Rivas; Allen P Minton
Journal:  Biophys Chem       Date:  2004-03-01       Impact factor: 2.352

5.  Characterization of weak protein dimerization by direct analysis of sedimentation equilibrium distributions: the INVEQ approach.

Authors:  Donald J Winzor; Peter R Wills
Journal:  Anal Biochem       Date:  2007-04-27       Impact factor: 3.365

6.  Quantitative characterization of weak self-association in concentrated solutions of immunoglobulin G via the measurement of sedimentation equilibrium and osmotic pressure.

Authors:  Mercedes Jiménez; Germán Rivas; Allen P Minton
Journal:  Biochemistry       Date:  2007-06-23       Impact factor: 3.162

7.  Sedimentation equilibrium in macromolecular solutions of arbitrary concentration. I. Self-associating proteins.

Authors:  R C Chatelier; A P Minton
Journal:  Biopolymers       Date:  1987-04       Impact factor: 2.505

8.  Thermodynamic nonideality in macromolecular solutions: interpretation of virial coefficients.

Authors:  P R Wills; W D Comper; D J Winzor
Journal:  Arch Biochem Biophys       Date:  1993-01       Impact factor: 4.013

9.  Determining confidence intervals for parameters derived from analysis of equilibrium analytical ultracentrifugation data.

Authors:  I Brooks; D G Watts; K K Soneson; P Hensley
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

10.  Analysis of data from the analytical ultracentrifuge by nonlinear least-squares techniques.

Authors:  M L Johnson; J J Correia; D A Yphantis; H R Halvorson
Journal:  Biophys J       Date:  1981-12       Impact factor: 4.033

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  4 in total

Review 1.  Foreword to 'Quantitative and analytical relations in biochemistry'-a special issue in honour of Donald J. Winzor's 80th birthday.

Authors:  Damien Hall; Stephen E Harding
Journal:  Biophys Rev       Date:  2016-11-04

2.  Bovine β-lactoglobulin is dimeric under imitative physiological conditions: dissociation equilibrium and rate constants over the pH range of 2.5-7.5.

Authors:  Davide Mercadante; Laurence D Melton; Gillian E Norris; Trevor S Loo; Martin A K Williams; Renwick C J Dobson; Geoffrey B Jameson
Journal:  Biophys J       Date:  2012-07-17       Impact factor: 4.033

3.  The analysis of macromolecular interactions by sedimentation equilibrium.

Authors:  Rodolfo Ghirlando
Journal:  Methods       Date:  2010-12-16       Impact factor: 3.608

4.  Measuring Ultra-Weak Protein Self-Association by Non-ideal Sedimentation Velocity.

Authors:  Sumit K Chaturvedi; Vatsala Sagar; Huaying Zhao; Graeme Wistow; Peter Schuck
Journal:  J Am Chem Soc       Date:  2019-02-06       Impact factor: 15.419

  4 in total

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