Literature DB >> 19649730

Rapid and simple methodology for isolation of high quality genomic DNA from coniferous tissues (Taxus baccata).

Abolfazl Barzegari1, Sepideh Zununi Vahed, Sina Atashpaz, Sajjad Khani, Yadollah Omidi.   

Abstract

Various investigations have been so far performed for extraction of genomic DNA from plant tissues, in which the extracted intact DNA can be exploited for a diverse range of biological studies. Extraction of high quality DNA from leathery plant tissues (e.g., coniferous organs) appears to be a critical stage. Moreover, for some species such as Taxus trees, bioprocess engineering and biosynthesis of secondary metabolites (e.g., paclitaxel) is a crucial step due to the restrictions associated with extinction of these species. However, extraction of intact genomic DNA from these plants still demands a rapid, easy and efficient protocol. To pursue such aim, in the current work, we report on the development of a simple and highly efficient method for the extraction of DNA from Taxus baccata. Based upon our protocol, interfering phenolic compounds were removed from extraction using polyvinylpyrrolidone and RNA contamination was resolved using LiCl. By employing this method, high quality genomic DNA was successfully extracted from leaves of T. baccata. The quality of extracted DNA was validated by various techniques such as RAPD marker, restriction digestions and pre-AFLP. Upon our findings, we propose this simple method to be considered for extraction of DNA from leathery plant tissues.

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Year:  2009        PMID: 19649730     DOI: 10.1007/s11033-009-9634-z

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  12 in total

1.  A scalable protocol for the isolation of large-sized genomic DNA within an hour from several bacteria.

Authors:  C K Syn; S Swarup
Journal:  Anal Biochem       Date:  2000-02-01       Impact factor: 3.365

2.  Comparative analysis of different DNA extraction protocols in fresh and herbarium specimens of the genus Dalbergia.

Authors:  R A Ribeiro; M B Lovato
Journal:  Genet Mol Res       Date:  2007-03-29

3.  A simple and rapid method for isolation of high quality genomic DNA from fruit trees and conifers using PVP.

Authors:  C S Kim; C H Lee; J S Shin; Y S Chung; N I Hyung
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

4.  Species separation of Taxus baccata, T. canadensis, and T. cuspidata (Taxaceae) and origins of their reputed hybrids inferred from RAPD and cpDNA data.

Authors:  Dennis Collins; Robert R Mill; Michael Möller
Journal:  Am J Bot       Date:  2003-02       Impact factor: 3.844

5.  Dose-finding and phase 2 study of weekly paclitaxel (taxol) and cisplatin combination in treating Chinese patients with advanced nonsmall cell lung cancer.

Authors:  Chih-Hung Chen; John W C Chang; Cheng-Huei Lee; Thomas C Y Tsao
Journal:  Am J Clin Oncol       Date:  2005-10       Impact factor: 2.339

6.  An optimized mini-preparation method to obtain high-quality genomic DNA from mature leaves of sunflower.

Authors:  J T Li; J Yang; D C Chen; X L Zhang; Z S Tang
Journal:  Genet Mol Res       Date:  2007-10-05

7.  Weekly paclitaxel for advanced aggressive classic Kaposi sarcoma: experience in 17 cases.

Authors:  L Brambilla; A Romanelli; M Bellinvia; S Ferrucci; M Vinci; V Boneschi; A Miedico; L Tedeschi
Journal:  Br J Dermatol       Date:  2008-03-20       Impact factor: 9.302

8.  Comparison of three DNA extraction methods for Mycobacterium bovis, Mycobacterium tuberculosis and Mycobacterium avium subsp. avium.

Authors:  A Amaro; E Duarte; A Amado; H Ferronha; A Botelho
Journal:  Lett Appl Microbiol       Date:  2008-05-21       Impact factor: 2.858

9.  Antioxidant activity of leaves and fruits of Iranian conifers.

Authors:  S A Emami; J Asili; Z Mohagheghi; M K Hassanzadeh
Journal:  Evid Based Complement Alternat Med       Date:  2007-09       Impact factor: 2.629

10.  Paclitaxel Induces Apoptosis in AIDS-Related Kaposi's Sarcoma Cells.

Authors:  J Cai; T Zheng; R Masood; D L Smith; D R Hinton; C N Kim; G Fang; K Bhalla; P S Gill
Journal:  Sarcoma       Date:  2000
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  5 in total

1.  A plant cocktail amenable for PCR-based genetic analysis in Arabidopsis thaliana.

Authors:  Simeon O Kotchoni; Emma W Gachomo; Jose C Jimenez-Lopez
Journal:  Mol Biol Rep       Date:  2011-01-18       Impact factor: 2.316

2.  A simple and effective method to obtain high DNA quality and quantity from Cerrado plant species.

Authors:  Diego Cerveira de Souza; Terezinha Aparecida Teixeira
Journal:  Mol Biol Rep       Date:  2019-05-09       Impact factor: 2.316

3.  Highly effective DNA extraction method from fresh, frozen, dried and clotted blood samples.

Authors:  Sara Samadi Shams; Sepideh Zununi Vahed; Farzaneh Soltanzad; Vala Kafil; Abolfazl Barzegari; Sina Atashpaz; Jaleh Barar
Journal:  Bioimpacts       Date:  2011-09-30

4.  A simple method for DNA extraction from mature date palm leaves: impact of sand grinding and composition of lysis buffer.

Authors:  Ibrahim A Arif; Mohammad A Bakir; Haseeb A Khan; Anis Ahamed; Ahmad H Al Farhan; Ali A Al Homaidan; Mohammad Al Sadoon; Ali H Bahkali; Mohammad Shobrak
Journal:  Int J Mol Sci       Date:  2010-09-08       Impact factor: 5.923

5.  A microRNA isolation method from clinical samples.

Authors:  Sepideh Zununi Vahed; Abolfazl Barzegari; Yalda Rahbar Saadat; Somayeh Mohammadi; Nasser Samadi
Journal:  Bioimpacts       Date:  2016-03-28
  5 in total

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