Literature DB >> 19646898

The mass-mobility correlation redux: the conformational landscape of anhydrous biomolecules.

John A McLean1.   

Abstract

Structural separations on the basis of gas-phase ion mobility-mass spectrometry are increasingly used for the analysis of complex biological samples. As a tool to elucidate biomolecular structure, ion mobility-mass spectrometry methods are unique in that direct molecular structural information is obtained for all resolved species, largely irrespective of the complexity of the sample. Computational approaches are used to interpret and discern structural details consistent with the empirical results. To a first approximation, correlations of mobility with mass allow for qualitative identification of the molecular class to which a particular species belongs. These correlations allow simultaneous characterization of different classes of biomolecules, which provides a means for combining omics measurements, such as lipidomics, proteomics, glycomics, and metabolomics, in the same analysis. Examination of the correlation of fine structure reveals that specific structural motifs, chemical functionality, chemical connectivity, and composition may also be determined, depending on the specific biomolecular class. Mapping the coarse and fine structure in ion mobility-mass spectrometry conformation space measurements provides an atlas for interpretation and discovery in complicated spectra.

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Year:  2009        PMID: 19646898     DOI: 10.1016/j.jasms.2009.06.016

Source DB:  PubMed          Journal:  J Am Soc Mass Spectrom        ISSN: 1044-0305            Impact factor:   3.109


  31 in total

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Authors:  Andrej Sali; Robert Glaeser; Thomas Earnest; Wolfgang Baumeister
Journal:  Nature       Date:  2003-03-13       Impact factor: 49.962

2.  Development of high-sensitivity ion trap ion mobility spectrometry time-of-flight techniques: a high-throughput nano-LC-IMS-TOF separation of peptides arising from a Drosophila protein extract.

Authors:  Sunnie Myung; Young Jin Lee; Myeong Hee Moon; John Taraszka; Rena Sowell; Stormy Koeniger; Amy E Hilderbrand; Stephen J Valentine; Lucy Cherbas; Peter Cherbas; Thomas C Kaufmann; David F Miller; Yehia Mechref; Milos V Novotny; Michael A Ewing; C Ray Sporleder; David E Clemmer
Journal:  Anal Chem       Date:  2003-10-01       Impact factor: 6.986

3.  Plasma chromatography of the monohalogenated benzenes.

Authors:  F W Karasek; O S Tatone
Journal:  Anal Chem       Date:  1972-09-01       Impact factor: 6.986

4.  Profiling and imaging of tissues by imaging ion mobility-mass spectrometry.

Authors:  John A McLean; Whitney B Ridenour; Richard M Caprioli
Journal:  J Mass Spectrom       Date:  2007-08       Impact factor: 1.982

5.  Ion mobility-mass spectrometry analysis of large protein complexes.

Authors:  Brandon T Ruotolo; Justin L P Benesch; Alan M Sandercock; Suk-Joon Hyung; Carol V Robinson
Journal:  Nat Protoc       Date:  2008-06-19       Impact factor: 13.491

6.  Collisional activation of protein complexes: picking up the pieces.

Authors:  Justin L P Benesch
Journal:  J Am Soc Mass Spectrom       Date:  2008-11-27       Impact factor: 3.109

7.  Profiling of human serum glycans associated with liver cancer and cirrhosis by IMS-MS.

Authors:  D Isailovic; R T Kurulugama; M D Plasencia; S T Stokes; Z Kyselova; R Goldman; Y Mechref; M V Novotny; D E Clemmer
Journal:  J Proteome Res       Date:  2008-02-01       Impact factor: 4.466

8.  Mapping the human plasma proteome by SCX-LC-IMS-MS.

Authors:  Xiaoyun Liu; Stephen J Valentine; Manolo D Plasencia; Sarah Trimpin; Stephen Naylor; David E Clemmer
Journal:  J Am Soc Mass Spectrom       Date:  2007-04-24       Impact factor: 3.109

9.  Characterizing ion mobility-mass spectrometry conformation space for the analysis of complex biological samples.

Authors:  Larissa S Fenn; Michal Kliman; Ablatt Mahsut; Sophie R Zhao; John A McLean
Journal:  Anal Bioanal Chem       Date:  2009-02-27       Impact factor: 4.142

10.  Gas-phase ion chromatography: transition metal state selection and carbon cluster formation.

Authors:  M T Bowers; P R Kemper; G von Helden; P A van Koppen
Journal:  Science       Date:  1993-06-04       Impact factor: 47.728

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  43 in total

1.  Separation and classification of lipids using differential ion mobility spectrometry.

Authors:  Alexandre A Shvartsburg; Giorgis Isaac; Nathalie Leveque; Richard D Smith; Thomas O Metz
Journal:  J Am Soc Mass Spectrom       Date:  2011-04-12       Impact factor: 3.109

2.  Towards monitoring real-time cellular response using an integrated microfluidics-matrix assisted laser desorption ionisation/nanoelectrospray ionisation-ion mobility-mass spectrometry platform.

Authors:  J R Enders; C C Marasco; A Kole; B Nguyen; S Sevugarajan; K T Seale; J P Wikswo; J A McLean
Journal:  IET Syst Biol       Date:  2010-11       Impact factor: 1.615

Review 3.  Integrating mass spectrometry of intact protein complexes into structural proteomics.

Authors:  Suk-Joon Hyung; Brandon T Ruotolo
Journal:  Proteomics       Date:  2012-05       Impact factor: 3.984

4.  Structuring Microbial Metabolic Responses to Multiplexed Stimuli via Self-Organizing Metabolomics Maps.

Authors:  Cody R Goodwin; Brett C Covington; Dagmara K Derewacz; C Ruth McNees; John P Wikswo; John A McLean; Brian O Bachmann
Journal:  Chem Biol       Date:  2015-04-30

5.  New Frontiers in Lipidomics Analyses using Structurally Selective Ion Mobility-Mass Spectrometry.

Authors:  Rachel A Harris; Katrina L Leaptrot; Jody C May; John A McLean
Journal:  Trends Analyt Chem       Date:  2019-04-06       Impact factor: 12.296

6.  A new ion mobility-linear ion trap instrument for complex mixture analysis.

Authors:  Gregory C Donohoe; Hossein Maleki; James R Arndt; Mahdiar Khakinejad; Jinghai Yi; Carroll McBride; Timothy R Nurkiewicz; Stephen J Valentine
Journal:  Anal Chem       Date:  2014-08-06       Impact factor: 6.986

Review 7.  Analysis of mammalian sphingolipids by liquid chromatography tandem mass spectrometry (LC-MS/MS) and tissue imaging mass spectrometry (TIMS).

Authors:  M Cameron Sullards; Ying Liu; Yanfeng Chen; Alfred H Merrill
Journal:  Biochim Biophys Acta       Date:  2011-07-01

8.  A Priori Intrinsic PTM Size Parameters for Predicting the Ion Mobilities of Modified Peptides.

Authors:  Julia L Kaszycki; Alexandre A Shvartsburg
Journal:  J Am Soc Mass Spectrom       Date:  2016-12-14       Impact factor: 3.109

9.  Variable-Velocity Traveling-Wave Ion Mobility Separation Enhancing Peak Capacity for Data-Independent Acquisition Proteomics.

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Journal:  Anal Chem       Date:  2017-05-09       Impact factor: 6.986

10.  Biomolecular signatures of diabetic wound healing by structural mass spectrometry.

Authors:  Kelly M Hines; Samir Ashfaq; Jeffrey M Davidson; Susan R Opalenik; John P Wikswo; John A McLean
Journal:  Anal Chem       Date:  2013-03-21       Impact factor: 6.986

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