Literature DB >> 21073240

Towards monitoring real-time cellular response using an integrated microfluidics-matrix assisted laser desorption ionisation/nanoelectrospray ionisation-ion mobility-mass spectrometry platform.

J R Enders1, C C Marasco, A Kole, B Nguyen, S Sevugarajan, K T Seale, J P Wikswo, J A McLean.   

Abstract

The combination of microfluidic cell trapping devices with ion mobility-mass spectrometry offers the potential for elucidating in real time the dynamic responses of small populations of cells to paracrine signals, changes in metabolite levels and delivery of drugs and toxins. Preliminary experiments examining peptides in methanol and recording the interactions of yeast and Jurkat cells with their superfusate have identified instrumental set-up and control parameters and online desalting procedures. Numerous initial experiments demonstrate and validate this new instrumental platform. Future outlooks and potential applications are addressed, specifically how this instrumentation may be used for fully automated systems biology studies of the significantly interdependent, dynamic internal workings of cellular metabolic and signalling pathways.

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Mesh:

Year:  2010        PMID: 21073240      PMCID: PMC4254925          DOI: 10.1049/iet-syb.2010.0012

Source DB:  PubMed          Journal:  IET Syst Biol        ISSN: 1751-8849            Impact factor:   1.615


  48 in total

1.  Integrated plastic microfluidic devices with ESI-MS for drug screening and residue analysis.

Authors:  Y Jiang; P C Wang; L E Locascio; C S Lee
Journal:  Anal Chem       Date:  2001-05-01       Impact factor: 6.986

2.  An ontology for a Robot Scientist.

Authors:  Larisa N Soldatova; Amanda Clare; Andrew Sparkes; Ross D King
Journal:  Bioinformatics       Date:  2006-07-15       Impact factor: 6.937

Review 3.  Engineering challenges of BioNEMS: the integration of microfluidics, micro- and nanodevices, models and external control for systems biology.

Authors:  J P Wikswo; A Prokop; F Baudenbacher; D Cliffel; B Csukas; M Velkovsky
Journal:  IEE Proc Nanobiotechnol       Date:  2006-08

Review 4.  Ion mobility-mass spectrometry.

Authors:  Abu B Kanu; Prabha Dwivedi; Maggie Tam; Laura Matz; Herbert H Hill
Journal:  J Mass Spectrom       Date:  2008-01       Impact factor: 1.982

5.  Distilling free-form natural laws from experimental data.

Authors:  Michael Schmidt; Hod Lipson
Journal:  Science       Date:  2009-04-03       Impact factor: 47.728

6.  Differential pH measurements of metabolic cellular activity in nl culture volumes using microfabricated iridium oxide electrodes.

Authors:  Igor A Ges; Borislav L Ivanov; Andreas A Werdich; Franz J Baudenbacher
Journal:  Biosens Bioelectron       Date:  2006-07-24       Impact factor: 10.618

7.  A microfluidic device to confine a single cardiac myocyte in a sub-nanoliter volume on planar microelectrodes for extracellular potential recordings.

Authors:  Andreas A Werdich; Eduardo A Lima; Borislav Ivanov; Igor Ges; Mark E Anderson; John P Wikswo; Franz J Baudenbacher
Journal:  Lab Chip       Date:  2004-05-12       Impact factor: 6.799

8.  Dual source ion mobility-mass spectrometer for direct comparison of electrospray ionization and MALDI collision cross section measurements.

Authors:  Sevugarajan Sundarapandian; Jody C May; John A McLean
Journal:  Anal Chem       Date:  2010-04-15       Impact factor: 6.986

9.  Mapping the human plasma proteome by SCX-LC-IMS-MS.

Authors:  Xiaoyun Liu; Stephen J Valentine; Manolo D Plasencia; Sarah Trimpin; Stephen Naylor; David E Clemmer
Journal:  J Am Soc Mass Spectrom       Date:  2007-04-24       Impact factor: 3.109

10.  Characterizing ion mobility-mass spectrometry conformation space for the analysis of complex biological samples.

Authors:  Larissa S Fenn; Michal Kliman; Ablatt Mahsut; Sophie R Zhao; John A McLean
Journal:  Anal Bioanal Chem       Date:  2009-02-27       Impact factor: 4.142

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  16 in total

1.  Automated refinement and inference of analytical models for metabolic networks.

Authors:  Michael D Schmidt; Ravishankar R Vallabhajosyula; Jerry W Jenkins; Jonathan E Hood; Abhishek S Soni; John P Wikswo; Hod Lipson
Journal:  Phys Biol       Date:  2011-08-10       Impact factor: 2.583

2.  Mechanistic analysis of challenge-response experiments.

Authors:  M S Shotwell; K J Drake; V Y Sidorov; J P Wikswo
Journal:  Biometrics       Date:  2013-07-16       Impact factor: 2.571

Review 3.  Using physiologically-based pharmacokinetic-guided "body-on-a-chip" systems to predict mammalian response to drug and chemical exposure.

Authors:  Jong Hwan Sung; Balaji Srinivasan; Mandy Brigitte Esch; William T McLamb; Catia Bernabini; Michael L Shuler; James J Hickman
Journal:  Exp Biol Med (Maywood)       Date:  2014-06-20

4.  Mass conservation and inference of metabolic networks from high-throughput mass spectrometry data.

Authors:  Pradeep Bandaru; Mukesh Bansal; Ilya Nemenman
Journal:  J Comput Biol       Date:  2011-02       Impact factor: 1.479

5.  I-Wire Heart-on-a-Chip I: Three-dimensional cardiac tissue constructs for physiology and pharmacology.

Authors:  Veniamin Y Sidorov; Philip C Samson; Tatiana N Sidorova; Jeffrey M Davidson; Chee C Lim; John P Wikswo
Journal:  Acta Biomater       Date:  2016-11-04       Impact factor: 8.947

6.  Engineering challenges for instrumenting and controlling integrated organ-on-chip systems.

Authors:  John P Wikswo; Frank E Block; David E Cliffel; Cody R Goodwin; Christina C Marasco; Dmitry A Markov; David L McLean; John A McLean; Jennifer R McKenzie; Ronald S Reiserer; Philip C Samson; David K Schaffer; Kevin T Seale; Stacy D Sherrod
Journal:  IEEE Trans Biomed Eng       Date:  2013-02-01       Impact factor: 4.538

7.  Biomolecular signatures of diabetic wound healing by structural mass spectrometry.

Authors:  Kelly M Hines; Samir Ashfaq; Jeffrey M Davidson; Susan R Opalenik; John P Wikswo; John A McLean
Journal:  Anal Chem       Date:  2013-03-21       Impact factor: 6.986

Review 8.  Microfluidic systems for studying neurotransmitters and neurotransmission.

Authors:  Callie A Croushore; Jonathan V Sweedler
Journal:  Lab Chip       Date:  2013-05-07       Impact factor: 6.799

9.  Thick-tissue bioreactor as a platform for long-term organotypic culture and drug delivery.

Authors:  Dmitry A Markov; Jenny Q Lu; Philip C Samson; John P Wikswo; Lisa J McCawley
Journal:  Lab Chip       Date:  2012-11-07       Impact factor: 6.799

10.  A dual-column solid phase extraction strategy for online collection and preparation of continuously flowing effluent streams for mass spectrometry.

Authors:  Jeffrey R Enders; Christina C Marasco; John P Wikswo; John A McLean
Journal:  Anal Chem       Date:  2012-09-25       Impact factor: 6.986

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