Literature DB >> 19643594

Structural snapshots of conformational changes in a seven-helix membrane protein: lessons from bacteriorhodopsin.

Teruhisa Hirai1, Sriram Subramaniam, Janos K Lanyi.   

Abstract

Recent advances in crystallizing integral membrane proteins have led to atomic models for the structures of several seven-helix membrane proteins, including those in the G-protein-coupled receptor family. Further steps toward exploring structure-function relationships will undoubtedly involve determination of the structural changes that occur during the various stages of receptor activation and deactivation. We expect that these efforts will bear many parallels to the studies of conformational changes in bacteriorhodopsin, which still remains the best-studied seven-helix membrane protein. Here, we provide a brief review of some of the lessons learned, the challenges faced, and the controversies over the last decade with determining conformational changes in bacteriorhodopsin. Our hope is that this analysis will be instructive for similar structural studies, especially of other seven-helix membrane proteins, in the coming decade.

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Year:  2009        PMID: 19643594      PMCID: PMC2747668          DOI: 10.1016/j.sbi.2009.07.009

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  52 in total

1.  Unraveling photoexcited conformational changes of bacteriorhodopsin by time resolved electron paramagnetic resonance spectroscopy.

Authors:  T Rink; M Pfeiffer; D Oesterhelt; K Gerwert; H J Steinhoff
Journal:  Biophys J       Date:  2000-03       Impact factor: 4.033

2.  Structure of the light-driven chloride pump halorhodopsin at 1.8 A resolution.

Authors:  M Kolbe; H Besir; L O Essen; D Oesterhelt
Journal:  Science       Date:  2000-05-26       Impact factor: 47.728

3.  Helix deformation is coupled to vectorial proton transport in the photocycle of bacteriorhodopsin.

Authors:  A Royant; K Edman; T Ursby; E Pebay-Peyroula; E M Landau; R Neutze
Journal:  Nature       Date:  2000-08-10       Impact factor: 49.962

4.  Molecular mechanism of vectorial proton translocation by bacteriorhodopsin.

Authors:  S Subramaniam; R Henderson
Journal:  Nature       Date:  2000-08-10       Impact factor: 49.962

5.  Structural alterations for proton translocation in the M state of wild-type bacteriorhodopsin.

Authors:  H J Sass; G Büldt; R Gessenich; D Hehn; D Neff; R Schlesinger; J Berendzen; P Ormos
Journal:  Nature       Date:  2000-08-10       Impact factor: 49.962

6.  Crystal structure of rhodopsin: A G protein-coupled receptor.

Authors:  K Palczewski; T Kumasaka; T Hori; C A Behnke; H Motoshima; B A Fox; I Le Trong; D C Teller; T Okada; R E Stenkamp; M Yamamoto; M Miyano
Journal:  Science       Date:  2000-08-04       Impact factor: 47.728

Review 7.  Identifying conformational changes with site-directed spin labeling.

Authors:  W L Hubbell; D S Cafiso; C Altenbach
Journal:  Nat Struct Biol       Date:  2000-09

8.  High-resolution X-ray structure of an early intermediate in the bacteriorhodopsin photocycle.

Authors:  K Edman; P Nollert; A Royant; H Belrhali; E Pebay-Peyroula; J Hajdu; R Neutze; E M Landau
Journal:  Nature       Date:  1999-10-21       Impact factor: 49.962

9.  Coupling photoisomerization of retinal to directional transport in bacteriorhodopsin.

Authors:  H Luecke; B Schobert; J P Cartailler; H T Richter; A Rosengarth; R Needleman; J K Lanyi
Journal:  J Mol Biol       Date:  2000-07-28       Impact factor: 5.469

10.  Crystallographic structure of the K intermediate of bacteriorhodopsin: conservation of free energy after photoisomerization of the retinal.

Authors:  Brigitte Schobert; Jill Cupp-Vickery; Viktor Hornak; Steven Smith; Janos Lanyi
Journal:  J Mol Biol       Date:  2002-08-23       Impact factor: 5.469

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  20 in total

Review 1.  Microbial and animal rhodopsins: structures, functions, and molecular mechanisms.

Authors:  Oliver P Ernst; David T Lodowski; Marcus Elstner; Peter Hegemann; Leonid S Brown; Hideki Kandori
Journal:  Chem Rev       Date:  2013-12-23       Impact factor: 60.622

2.  Structural insights into the proton pumping by unusual proteorhodopsin from nonmarine bacteria.

Authors:  Ivan Gushchin; Pavel Chervakov; Pavel Kuzmichev; Alexander N Popov; Ekaterina Round; Valentin Borshchevskiy; Andrii Ishchenko; Lada Petrovskaya; Vladimir Chupin; Dmitry A Dolgikh; Alexander S Arseniev; Alexander A Arseniev; Mikhail Kirpichnikov; Valentin Gordeliy
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-19       Impact factor: 11.205

Review 3.  G protein-coupled receptors: mutations and endocrine diseases.

Authors:  Gilbert Vassart; Sabine Costagliola
Journal:  Nat Rev Endocrinol       Date:  2011-02-08       Impact factor: 43.330

4.  Structure-Function Relationship of Channelrhodopsins.

Authors:  Hideaki E Kato
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

Review 5.  Some factors affecting the process of photoinduced hydroxylaminolysis in different bacteriorhodopsin-based media.

Authors:  Anna B Druzhko; Tatyana V Dyukova; Sergey K Pirutin
Journal:  Eur Biophys J       Date:  2017-05-04       Impact factor: 1.733

6.  Comparison analysis of primary ligand-binding sites in seven-helix membrane proteins.

Authors:  Vagmita Pabuwal; Zhijun Li
Journal:  Biopolymers       Date:  2011-01       Impact factor: 2.505

7.  Curvature forces in membrane lipid-protein interactions.

Authors:  Michael F Brown
Journal:  Biochemistry       Date:  2012-11-27       Impact factor: 3.162

Review 8.  Molecular mechanisms for generating transmembrane proton gradients.

Authors:  M R Gunner; Muhamed Amin; Xuyu Zhu; Jianxun Lu
Journal:  Biochim Biophys Acta       Date:  2013-03-16

9.  Nanoparticle surface-enhanced Raman scattering of bacteriorhodopsin stabilized by amphipol A8-35.

Authors:  V Polovinkin; T Balandin; O Volkov; E Round; V Borshchevskiy; P Utrobin; D von Stetten; A Royant; D Willbold; G Arzumanyan; V Chupin; J-L Popot; V Gordeliy
Journal:  J Membr Biol       Date:  2014-09-06       Impact factor: 1.843

10.  Temperature-dependent macromolecular X-ray crystallography.

Authors:  Martin Weik; Jacques Philippe Colletier
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24
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