Literature DB >> 19639940

Squaraine rotaxanes with boat conformation macrocycles.

Na Fu1, Jeffrey M Baumes, Easwaran Arunkumar, Bruce C Noll, Bradley D Smith.   

Abstract

Mechanical encapsulation of fluorescent, deep-red bis(anilino)squaraine dyes inside Leigh-type tetralactam macrocycles produces interlocked squaraine rotaxanes. The surrounding macrocycles are flexible and undergo rapid exchange of chair and boat conformations in solution. A series of X-ray crystal structures show how the rotaxane co-conformational exchange process involves simultaneous lateral oscillation of the macrocycle about the center of the encapsulated squaraine thread. Rotaxane macrocycles with 1,4-phenylene sidewalls and 2,6-pyridine dicarboxamide bridging units are more likely to adopt boat conformations in the solid state than analogous squaraine rotaxane systems with isophthalamide-containing macrocycles. A truncated squaraine dye, with a secondary amine attached directly to the central C(4)O(2) core, is less electrophilic than the extended bis(anilino)squaraine analogue, but it is still susceptible to chemical and photochemical bleaching. Its stability is greatly enhanced when it is encapsulated as an interlocked squaraine rotaxane. An X-ray crystal structure of this truncated squaraine rotaxane shows the macrocycle in a boat conformation, and NMR studies indicate that the boat is maintained in solution. Encapsulation as a rotaxane increases the dye's brightness by a factor of 6. The encapsulation process appears to constrain the dye and reduce deformation of the chromophore from planarity. This study shows how mechanical encapsulation as a rotaxane can be used as a rational design parameter to fine-tune the chemical and photochemical properties of squaraine dyes.

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Year:  2009        PMID: 19639940      PMCID: PMC2847772          DOI: 10.1021/jo901298n

Source DB:  PubMed          Journal:  J Org Chem        ISSN: 0022-3263            Impact factor:   4.354


  41 in total

1.  Fluorescence resonance energy transfer across a mechanical bond of a rotaxane.

Authors:  Hideki Onagi; Julius Rebek
Journal:  Chem Commun (Camb)       Date:  2005-08-18       Impact factor: 6.222

2.  Recent progress on switchable rotaxanes.

Authors:  He Tian; Qiao-Chun Wang
Journal:  Chem Soc Rev       Date:  2006-02-03       Impact factor: 54.564

3.  Reverse shuttling in a fullerene-stoppered rotaxane.

Authors:  Aurelio Mateo-Alonso; Giulia Fioravanti; Massimo Marcaccio; Francesco Paolucci; Dhiredj C Jagesar; Albert M Brouwer; Maurizio Prato
Journal:  Org Lett       Date:  2006-10-26       Impact factor: 6.005

4.  Squaraine rotaxanes: superior substitutes for Cy-5 in molecular probes for near-infrared fluorescence cell imaging.

Authors:  James R Johnson; Na Fu; Easwaran Arunkumar; W Matthew Leevy; Seth T Gammon; David Piwnica-Worms; Bradley D Smith
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

5.  Conformational flexibility of tetralactam macrocycles and their intermolecular hydrogen-bonding patterns in the solid state.

Authors:  Sascha S Zhu; Martin Nieger; Jörg Daniels; Thorsten Felder; Iordan Kossev; Thomas Schmidt; Moritz Sokolowski; Fritz Vögtle; Christoph A Schalley
Journal:  Chemistry       Date:  2009       Impact factor: 5.236

6.  Photoisomerization of spiropyran for driving a molecular shuttle.

Authors:  Weidong Zhou; Dugang Chen; Junbo Li; Jialiang Xu; Jing Lv; Huibiao Liu; Yuliang Li
Journal:  Org Lett       Date:  2007-09-06       Impact factor: 6.005

7.  Stiff, and sticky in the right places: the dramatic influence of preorganizing guest binding sites on the hydrogen bond-directed assembly of rotaxanes.

Authors:  F G Gatti; D A Leigh; S A Nepogodiev; A M Slawin; S J Teat; J K Wong
Journal:  J Am Chem Soc       Date:  2001-06-27       Impact factor: 15.419

8.  Squaraine-derived rotaxanes: highly stable, fluorescent near-IR dyes.

Authors:  Easwaran Arunkumar; Na Fu; Bradley D Smith
Journal:  Chemistry       Date:  2006-06-02       Impact factor: 5.236

9.  Flavin-based [2]rotaxanes.

Authors:  Graeme Cooke; James F Garety; Brian Jordan; Nadiya Kryvokhyzha; Andy Parkin; Gouher Rabani; Vincent M Rotello
Journal:  Org Lett       Date:  2006-05-25       Impact factor: 6.005

10.  Squaraines as fluoro-chromogenic probes for thiol-containing compounds and their application to the detection of biorelevant thiols.

Authors:  Jose V Ros-Lis; Beatriz García; Diego Jiménez; Ramón Martínez-Máñez; Félix Sancenón; Juan Soto; Fernando Gonzalvo; M Carmen Valldecabres
Journal:  J Am Chem Soc       Date:  2004-04-07       Impact factor: 15.419

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  4 in total

1.  Optical imaging of bacterial infection in living mice using deep-red fluorescent squaraine rotaxane probes.

Authors:  Alexander G White; Na Fu; W Matthew Leevy; Jung-Jae Lee; Michael A Blasco; Bradley D Smith
Journal:  Bioconjug Chem       Date:  2010-07-21       Impact factor: 4.774

2.  Microwave-assisted slipping synthesis of fluorescent squaraine rotaxane probe for bacterial imaging.

Authors:  Jung-Jae Lee; Alexander G White; Jeffrey M Baumes; Bradley D Smith
Journal:  Chem Commun (Camb)       Date:  2010-01-13       Impact factor: 6.222

3.  New Class of Hydroxy-Substituted Squaraine Rotaxane.

Authors:  Na Fu; Jeremiah J Gassensmith; Bradley D Smith
Journal:  Aust J Chem       Date:  2010       Impact factor: 1.321

Review 4.  Rotaxane nanomachines in future molecular electronics.

Authors:  Peiqiao Wu; Bhushan Dharmadhikari; Prabir Patra; Xingguo Xiong
Journal:  Nanoscale Adv       Date:  2022-06-24
  4 in total

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