Literature DB >> 19637873

Divergent modes of enzyme inhibition in a homologous structure-activity series.

Rafaela S Ferreira1, Clifford Bryant, Kenny K H Ang, James H McKerrow, Brian K Shoichet, Adam R Renslo.   

Abstract

A docking screen identified reversible, noncovalent inhibitors (e.g., 1) of the parasite cysteine protease cruzain. Chemical optimization of 1 led to a series of oxadiazoles possessing interpretable SAR and potencies as much as 500-fold greater than 1. Detailed investigation of the SAR series subsequently revealed that many members of the oxadiazole class (and surprisingly also 1) act via divergent modes of inhibition (competitive or via colloidal aggregation) depending on the assay conditions employed.

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Year:  2009        PMID: 19637873      PMCID: PMC3760508          DOI: 10.1021/jm9009229

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  23 in total

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Authors:  John J Irwin; Brian K Shoichet
Journal:  J Chem Inf Model       Date:  2005 Jan-Feb       Impact factor: 4.956

Review 2.  Screening in a spirit haunted world.

Authors:  Brian K Shoichet
Journal:  Drug Discov Today       Date:  2006-07       Impact factor: 7.851

3.  A detergent-based assay for the detection of promiscuous inhibitors.

Authors:  Brian Y Feng; Brian K Shoichet
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

4.  Stability and equilibria of promiscuous aggregates in high protein milieus.

Authors:  Kristin E D Coan; Brian K Shoichet
Journal:  Mol Biosyst       Date:  2007-01-02

5.  Potency and selectivity of P2/P3-modified inhibitors of cysteine proteases from trypanosomes.

Authors:  Priyadarshini Jaishankar; Elizabeth Hansell; Dong-Mei Zhao; Patricia S Doyle; James H McKerrow; Adam R Renslo
Journal:  Bioorg Med Chem Lett       Date:  2007-11-22       Impact factor: 2.823

6.  A high-throughput screen for aggregation-based inhibition in a large compound library.

Authors:  Brian Y Feng; Anton Simeonov; Ajit Jadhav; Kerim Babaoglu; James Inglese; Brian K Shoichet; Christopher P Austin
Journal:  J Med Chem       Date:  2007-04-21       Impact factor: 7.446

7.  Stoichiometry and physical chemistry of promiscuous aggregate-based inhibitors.

Authors:  Kristin E D Coan; Brian K Shoichet
Journal:  J Am Chem Soc       Date:  2008-06-28       Impact factor: 15.419

8.  Inhibition of kinesin motor proteins by adociasulfate-2.

Authors:  Khalilah G Reddie; Donald R Roberts; Timothy M Dore
Journal:  J Med Chem       Date:  2006-08-10       Impact factor: 7.446

9.  Detailed kinetic studies of an aggregating inhibitor; inhibition of phosphomannomutase/phosphoglucomutase by disperse blue 56.

Authors:  Hao-Yang Liu; Ziaohui Wang; Catherine Regni; Xiaoqin Zou; Peter A Tipton
Journal:  Biochemistry       Date:  2004-07-13       Impact factor: 3.162

10.  Identification of a new class of nonpeptidic inhibitors of cruzain.

Authors:  Katrien Brak; Patricia S Doyle; James H McKerrow; Jonathan A Ellman
Journal:  J Am Chem Soc       Date:  2008-04-25       Impact factor: 15.419

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  19 in total

1.  The Ecstasy and Agony of Assay Interference Compounds.

Authors:  Courtney Aldrich; Carolyn Bertozzi; Gunda I Georg; Laura Kiessling; Craig Lindsley; Dennis Liotta; Kenneth M Merz; Alanna Schepartz; Shaomeng Wang
Journal:  ACS Med Chem Lett       Date:  2017-02-28       Impact factor: 4.345

2.  An Aggregation Advisor for Ligand Discovery.

Authors:  John J Irwin; Da Duan; Hayarpi Torosyan; Allison K Doak; Kristin T Ziebart; Teague Sterling; Gurgen Tumanian; Brian K Shoichet
Journal:  J Med Chem       Date:  2015-08-28       Impact factor: 7.446

3.  Structure-based design, synthesis and biological evaluation of β-glucuronidase inhibitors.

Authors:  Khalid M Khan; Nida Ambreen; Muhammad Taha; Sobia A Halim; Shagufta Naureen; Saima Rasheed; Shahnaz Perveen; Sajjad Ali; Mohammad Iqbal Choudhary
Journal:  J Comput Aided Mol Des       Date:  2014-04-27       Impact factor: 3.686

4.  Tetrafluorophenoxymethyl ketone cruzain inhibitors with improved pharmacokinetic properties as therapeutic leads for Chagas' disease.

Authors:  R Jeffrey Neitz; Clifford Bryant; Steven Chen; Jiri Gut; Estefania Hugo Caselli; Servando Ponce; Somenath Chowdhury; Haichao Xu; Michelle R Arkin; Jonathan A Ellman; Adam R Renslo
Journal:  Bioorg Med Chem Lett       Date:  2015-06-23       Impact factor: 2.823

5.  Development of a pharmacophore for cruzain using oxadiazoles as virtual molecular probes: quantitative structure-activity relationship studies.

Authors:  Anacleto S de Souza; Marcelo T de Oliveira; Adriano D Andricopulo
Journal:  J Comput Aided Mol Des       Date:  2017-08-09       Impact factor: 3.686

6.  Synthesis of a sugar-based thiosemicarbazone series and structure-activity relationship versus the parasite cysteine proteases rhodesain, cruzain, and Schistosoma mansoni cathepsin B1.

Authors:  Nayara Cristina Fonseca; Luana Faria da Cruz; Filipe da Silva Villela; Glaécia Aparecida do Nascimento Pereira; Jair Lage de Siqueira-Neto; Danielle Kellar; Brian M Suzuki; Debalina Ray; Thiago Belarmino de Souza; Ricardo José Alves; Policarpo Ademar Sales Júnior; Alvaro José Romanha; Silvane Maria Fonseca Murta; James H McKerrow; Conor R Caffrey; Renata Barbosa de Oliveira; Rafaela Salgado Ferreira
Journal:  Antimicrob Agents Chemother       Date:  2015-02-23       Impact factor: 5.191

7.  Protein-Observed Fluorine NMR Is a Complementary Ligand Discovery Method to 1H CPMG Ligand-Observed NMR.

Authors:  Andrew K Urick; Luis Pablo Calle; Juan F Espinosa; Haitao Hu; William C K Pomerantz
Journal:  ACS Chem Biol       Date:  2016-10-05       Impact factor: 5.100

8.  Complementarity between a docking and a high-throughput screen in discovering new cruzain inhibitors.

Authors:  Rafaela S Ferreira; Anton Simeonov; Ajit Jadhav; Oliv Eidam; Bryan T Mott; Michael J Keiser; James H McKerrow; David J Maloney; John J Irwin; Brian K Shoichet
Journal:  J Med Chem       Date:  2010-07-08       Impact factor: 7.446

9.  Virtual Screening for UDP-Galactopyranose Mutase Ligands Identifies a New Class of Antimycobacterial Agents.

Authors:  Virginia A Kincaid; Nir London; Kittikhun Wangkanont; Darryl A Wesener; Sarah A Marcus; Annie Héroux; Lyudmila Nedyalkova; Adel M Talaat; Katrina T Forest; Brian K Shoichet; Laura L Kiessling
Journal:  ACS Chem Biol       Date:  2015-08-17       Impact factor: 5.100

10.  Mapping inhibitor binding modes on an active cysteine protease via nuclear magnetic resonance spectroscopy.

Authors:  Gregory M Lee; Eaman Balouch; David H Goetz; Ana Lazic; James H McKerrow; Charles S Craik
Journal:  Biochemistry       Date:  2012-12-10       Impact factor: 3.162

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