Literature DB >> 19633108

Strategy for extracting DNA from clay soil and detecting a specific target sequence via selective enrichment and real-time (quantitative) PCR amplification.

Kweku K Yankson1, Todd R Steck.   

Abstract

We present a simple strategy for isolating and accurately enumerating target DNA from high-clay-content soils: desorption with buffers, an optional magnetic capture hybridization step, and quantitation via real-time PCR. With the developed technique, microg quantities of DNA were extracted from mg samples of pure kaolinite and a field clay soil.

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Year:  2009        PMID: 19633108      PMCID: PMC2747842          DOI: 10.1128/AEM.00211-09

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  24 in total

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3.  DNA extraction from soils: old bias for new microbial diversity analysis methods.

Authors:  F Martin-Laurent; L Philippot; S Hallet; R Chaussod; J C Germon; G Soulas; G Catroux
Journal:  Appl Environ Microbiol       Date:  2001-05       Impact factor: 4.792

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Journal:  J Microbiol Methods       Date:  2003-03       Impact factor: 2.363

5.  Gene capture and random amplification for quantitative recovery of homologous genes.

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Journal:  Mol Cell Probes       Date:  2006-09-30       Impact factor: 2.365

6.  High diversity in DNA of soil bacteria.

Authors:  V Torsvik; J Goksøyr; F L Daae
Journal:  Appl Environ Microbiol       Date:  1990-03       Impact factor: 4.792

7.  A modular set of lacZ fusion vectors for studying gene expression in Caenorhabditis elegans.

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8.  Evaluation of extraction and purification methods for obtaining PCR-amplifiable DNA from compost for microbial community analysis.

Authors:  M G LaMontagne; F C Michel; P A Holden; C A Reddy
Journal:  J Microbiol Methods       Date:  2002-05       Impact factor: 2.363

Review 9.  Direct extraction of DNA from soils for studies in microbial ecology.

Authors:  Mark A Schneegurt; Sophia Y Dore; Charles F Kulpa
Journal:  Curr Issues Mol Biol       Date:  2003-01       Impact factor: 2.081

10.  Magnetic bead hybridization to detect enterotoxigenic Escherichia coli strains associated with cattle in environmental water sources.

Authors:  Yu-Li Tsai; Joanne Y Le; Betty H Olson
Journal:  Can J Microbiol       Date:  2003-06       Impact factor: 2.419

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  5 in total

1.  Microbial Ecology: Where are we now?

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Journal:  Postdoc J       Date:  2016-11

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Journal:  BMC Microbiol       Date:  2012-06-06       Impact factor: 3.605

3.  Comparison of DNA extraction kits and modification of DNA elution procedure for the quantitation of subdominant bacteria from piggery effluents with real-time PCR.

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4.  Improved yield of high molecular weight DNA coincides with increased microbial diversity access from iron oxide cemented sub-surface clay environments.

Authors:  Richard A Hurt; Michael S Robeson; Migun Shakya; James G Moberly; Tatiana A Vishnivetskaya; Baohua Gu; Dwayne A Elias
Journal:  PLoS One       Date:  2014-07-17       Impact factor: 3.240

5.  Validating DNA Extraction Protocols for Bentonite Clay.

Authors:  Katja Engel; Sara Coyotzi; Melody A Vachon; Jennifer R McKelvie; Josh D Neufeld
Journal:  mSphere       Date:  2019-10-30       Impact factor: 4.389

  5 in total

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