Literature DB >> 19633106

Isolation and characterization of "Dehalococcoides" sp. strain MB, which dechlorinates tetrachloroethene to trans-1,2-dichloroethene.

Dan Cheng1, Jianzhong He.   

Abstract

In an attempt to understand the microorganisms involved in the generation of trans-1,2-dichloroethene (trans-DCE), pure-culture "Dehalococcoides" sp. strain MB was isolated from environmental sediments. In contrast to currently known tetrachloroethene (PCE)- or trichloroethene (TCE)-dechlorinating pure cultures, which generate cis-DCE as the predominant product, Dehalococcoides sp. strain MB reductively dechlorinates PCE to trans-DCE and cis-DCE at a ratio of 7.3 (+/-0.4):1. It utilizes H2 as the sole electron donor and PCE or TCE as the electron acceptor during anaerobic respiration. Strain MB is a disc-shaped, nonmotile bacterium. Under an atomic force microscope, the cells appear singly or in pairs and are 1.0 microm in diameter and approximately 150 nm in depth. The purity was confirmed by culture-based approaches and 16S rRNA gene-based analysis and was corroborated further by putative reductive dehalogenase (RDase) gene-based, quantitative real-time PCR. Although strain MB shares 100% 16S rRNA gene sequence identity with Dehalococcoides ethenogenes strain 195, these two strains possess different dechlorinating pathways. Microarray analysis revealed that 10 putative RDase genes present in strain 195 were also detected in strain MB. Successful cultivation of strain MB indicates that the biotic process could contribute significantly to the generation of trans-DCE in chloroethene-contaminated sites. It also enhances our understanding of the evolution of this unusual microbial group, Dehalococcoides species.

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Year:  2009        PMID: 19633106      PMCID: PMC2747852          DOI: 10.1128/AEM.00767-09

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  41 in total

1.  Analysis of high density expression microarrays with signed-rank call algorithms.

Authors:  W-m Liu; R Mei; X Di; T B Ryder; E Hubbell; S Dee; T A Webster; C A Harrington; M-h Ho; J Baid; S P Smeekens
Journal:  Bioinformatics       Date:  2002-12       Impact factor: 6.937

2.  Temporal transcriptomic microarray analysis of "Dehalococcoides ethenogenes" strain 195 during the transition into stationary phase.

Authors:  David R Johnson; Eoin L Brodie; Alan E Hubbard; Gary L Andersen; Stephen H Zinder; Lisa Alvarez-Cohen
Journal:  Appl Environ Microbiol       Date:  2008-02-29       Impact factor: 4.792

3.  Isolation and characterization of a novel bacterium growing via reductive dehalogenation of 2-chlorophenol.

Authors:  J R Cole; A L Cascarelli; W W Mohn; J M Tiedje
Journal:  Appl Environ Microbiol       Date:  1994-10       Impact factor: 4.792

4.  16S rRNA gene-based detection of tetrachloroethene-dechlorinating Desulfuromonas and Dehalococcoides species.

Authors:  F E Löffler; Q Sun; J Li; J M Tiedje
Journal:  Appl Environ Microbiol       Date:  2000-04       Impact factor: 4.792

5.  Bacterial dehalorespiration with chlorinated benzenes.

Authors:  L Adrian; U Szewzyk; J Wecke; H Görisch
Journal:  Nature       Date:  2000-11-30       Impact factor: 49.962

6.  Discrimination of multiple Dehalococcoides strains in a trichloroethene enrichment by quantification of their reductive dehalogenase genes.

Authors:  Victor F Holmes; Jianzhong He; Patrick K H Lee; Lisa Alvarez-Cohen
Journal:  Appl Environ Microbiol       Date:  2006-09       Impact factor: 4.792

7.  Dehalorespiration with hexachlorobenzene and pentachlorobenzene by Dehalococcoides sp. strain CBDB1.

Authors:  Gopalakrishnan Jayachandran; Helmut Görisch; Lorenz Adrian
Journal:  Arch Microbiol       Date:  2003-10-16       Impact factor: 2.552

8.  Genetic identification of a putative vinyl chloride reductase in Dehalococcoides sp. strain BAV1.

Authors:  Rosa Krajmalnik-Brown; Tina Hölscher; Ivy N Thomson; F Michael Saunders; Kirsti M Ritalahti; Frank E Löffler
Journal:  Appl Environ Microbiol       Date:  2004-10       Impact factor: 4.792

9.  Desulfitobacterium sp. strain PCE1, an anaerobic bacterium that can grow by reductive dechlorination of tetrachloroethene or ortho-chlorinated phenols.

Authors:  J Gerritse; V Renard; T M Pedro Gomes; P A Lawson; M D Collins; J C Gottschal
Journal:  Arch Microbiol       Date:  1996-02       Impact factor: 2.552

10.  Reductive dechlorination of chloroethenes by Dehalococcoides-containing cultures enriched from a polychlorinated-dioxin-contaminated microcosm.

Authors:  Hiroyuki Futamata; Naoko Yoshida; Takashi Kurogi; Shinichi Kaiya; Akira Hiraishi
Journal:  ISME J       Date:  2007-08-09       Impact factor: 10.302

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  29 in total

1.  Phylogenetic microarray analysis of a microbial community performing reductive dechlorination at a TCE-contaminated site.

Authors:  Patrick K H Lee; F Warnecke; Eoin L Brodie; Tamzen W Macbeth; Mark E Conrad; Gary L Andersen; Lisa Alvarez-Cohen
Journal:  Environ Sci Technol       Date:  2011-12-27       Impact factor: 9.028

2.  Meta-analyses of Dehalococcoides mccartyi strain 195 transcriptomic profiles identify a respiration rate-related gene expression transition point and interoperon recruitment of a key oxidoreductase subunit.

Authors:  Cresten B Mansfeldt; Annette R Rowe; Gretchen L W Heavner; Stephen H Zinder; Ruth E Richardson
Journal:  Appl Environ Microbiol       Date:  2014-07-25       Impact factor: 4.792

3.  Normalized Quantitative PCR Measurements as Predictors for Ethene Formation at Sites Impacted with Chlorinated Ethenes.

Authors:  Katherine Clark; Dora M Taggart; Brett R Baldwin; Kirsti M Ritalahti; Robert W Murdoch; Janet K Hatt; Frank E Löffler
Journal:  Environ Sci Technol       Date:  2018-11-08       Impact factor: 9.028

4.  Single cell genomic study of Dehalococcoidetes species from deep-sea sediments of the Peruvian Margin.

Authors:  Anne-Kristin Kaster; Koshlan Mayer-Blackwell; Ben Pasarelli; Alfred M Spormann
Journal:  ISME J       Date:  2014-03-06       Impact factor: 10.302

5.  Role of "Dehalococcoides" spp. in the anaerobic transformation of hexachlorobenzene in European rivers.

Authors:  Neslihan Taş; Miriam H A van Eekert; Anke Wagner; Gosse Schraa; Willem M de Vos; Hauke Smidt
Journal:  Appl Environ Microbiol       Date:  2011-05-13       Impact factor: 4.792

6.  Design and verification of a pangenome microarray oligonucleotide probe set for Dehalococcoides spp.

Authors:  Laura A Hug; Maryam Salehi; Paulo Nuin; Elisabeth R Tillier; Elizabeth A Edwards
Journal:  Appl Environ Microbiol       Date:  2011-06-10       Impact factor: 4.792

7.  Dechlorination and organohalide-respiring bacteria dynamics in sediment samples of the Yangtze Three Gorges Reservoir.

Authors:  Irene Kranzioch; Claudia Stoll; Andreas Holbach; Hao Chen; Lijing Wang; Binghui Zheng; Stefan Norra; Yonghong Bi; Karl-Werner Schramm; Andreas Tiehm
Journal:  Environ Sci Pollut Res Int       Date:  2013-02-20       Impact factor: 4.223

8.  Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides.

Authors:  Paul J McMurdie; Sebastian F Behrens; Jochen A Müller; Jonathan Göke; Kirsti M Ritalahti; Ryan Wagner; Eugene Goltsman; Alla Lapidus; Susan Holmes; Frank E Löffler; Alfred M Spormann
Journal:  PLoS Genet       Date:  2009-11-06       Impact factor: 5.917

9.  Organic cofactors in the metabolism of Dehalococcoides mccartyi strains.

Authors:  Christian J Schipp; Ernest Marco-Urrea; Anja Kublik; Jana Seifert; Lorenz Adrian
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-03-11       Impact factor: 6.237

10.  Distribution of dehalogenation activity in subseafloor sediments of the Nankai Trough subduction zone.

Authors:  Taiki Futagami; Yuki Morono; Takeshi Terada; Anna H Kaksonen; Fumio Inagaki
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-03-11       Impact factor: 6.237

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