Literature DB >> 30365883

Normalized Quantitative PCR Measurements as Predictors for Ethene Formation at Sites Impacted with Chlorinated Ethenes.

Katherine Clark1, Dora M Taggart1, Brett R Baldwin1, Kirsti M Ritalahti, Robert W Murdoch, Janet K Hatt2, Frank E Löffler3.   

Abstract

Quantitative PCR (qPCR) targeting Dehalococcoides mccartyi ( Dhc) biomarker genes supports effective management at sites impacted with chlorinated ethenes. To establish correlations between Dhc biomarker gene abundances and ethene formation (i.e., detoxification), 859 groundwater samples representing 62 sites undergoing monitored natural attenuation or enhanced remediation were analyzed. Dhc 16S rRNA genes and the vinyl chloride (VC) reductive dehalogenase genes bvcA and vcrA were detected in 88% and 61% of samples, respectively, from wells with ethene. Dhc 16S rRNA, bvcA, vcrA, and tceA (implicated in cometabolic reductive VC dechlorination) gene abundances all positively correlated with ethene formation. Significantly greater ethene concentrations were observed when Dhc 16S rRNA gene and VC RDase gene abundances exceeded 107 and 106 copies L-1, respectively, and when Dhc 16S rRNA- and bvcA + vcrA-to-total bacterial 16S rRNA gene ratios exceeded 0.1%. Dhc 16S rRNA gene-to- vcrA/ bvcA ratios near unity also indicated elevated ethene; however, no increased ethene was observed in 19 wells where vcrA and/or bvcA gene copy numbers exceeded Dhc cell numbers 10- to 10 000-fold. Approximately one-third of samples with detectable ethene lacked bvcA, vcrA, and tceA, suggesting that comprehensive understanding of VC detoxification biomarkers has not been achieved. Although the current biomarker suite is incomplete, the data analysis corroborates the value of the available Dhc DNA biomarkers for prognostic and diagnostic groundwater monitoring at sites impacted with chlorinated ethenes.

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Year:  2018        PMID: 30365883      PMCID: PMC6945293          DOI: 10.1021/acs.est.8b04373

Source DB:  PubMed          Journal:  Environ Sci Technol        ISSN: 0013-936X            Impact factor:   9.028


  47 in total

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Authors:  Andrea Leeson; Hans F Stroo; Paul C Johnson
Journal:  Ground Water       Date:  2013-03       Impact factor: 2.671

2.  Quantitative real-time PCR (qPCR) detection chemistries affect enumeration of the Dehalococcoides 16S rRNA gene in groundwater.

Authors:  Janet K Hatt; Frank E Löffler
Journal:  J Microbiol Methods       Date:  2011-12-19       Impact factor: 2.363

3.  Chlorinated ethene source remediation: lessons learned.

Authors:  Hans F Stroo; Andrea Leeson; Jeffrey A Marqusee; Paul C Johnson; C Herb Ward; Michael C Kavanaugh; Tom C Sale; Charles J Newell; Kurt D Pennell; Carmen A Lebrón; Marvin Unger
Journal:  Environ Sci Technol       Date:  2012-05-18       Impact factor: 9.028

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Authors:  Victor F Holmes; Jianzhong He; Patrick K H Lee; Lisa Alvarez-Cohen
Journal:  Appl Environ Microbiol       Date:  2006-09       Impact factor: 4.792

5.  Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes.

Authors:  Rekha Seshadri; Lorenz Adrian; Derrick E Fouts; Jonathan A Eisen; Adam M Phillippy; Barbara A Methe; Naomi L Ward; William C Nelson; Robert T Deboy; Hoda M Khouri; James F Kolonay; Robert J Dodson; Sean C Daugherty; Lauren M Brinkac; Steven A Sullivan; Ramana Madupu; Karen E Nelson; Katherine H Kang; Marjorie Impraim; Kevin Tran; Jeffrey M Robinson; Heather A Forberger; Claire M Fraser; Stephen H Zinder; John F Heidelberg
Journal:  Science       Date:  2005-01-07       Impact factor: 47.728

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Authors:  Frank E Löffler; Jun Yan; Kirsti M Ritalahti; Lorenz Adrian; Elizabeth A Edwards; Konstantinos T Konstantinidis; Jochen A Müller; Heather Fullerton; Stephen H Zinder; Alfred M Spormann
Journal:  Int J Syst Evol Microbiol       Date:  2012-04-27       Impact factor: 2.747

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Authors:  Jochen A Müller; Bettina M Rosner; Gregory Von Abendroth; Galit Meshulam-Simon; Perry L McCarty; Alfred M Spormann
Journal:  Appl Environ Microbiol       Date:  2004-08       Impact factor: 4.792

9.  Dehalogenimonas lykanthroporepellens gen. nov., sp. nov., a reductively dehalogenating bacterium isolated from chlorinated solvent-contaminated groundwater.

Authors:  William M Moe; Jun Yan; M Fernanda Nobre; Milton S da Costa; Fred A Rainey
Journal:  Int J Syst Evol Microbiol       Date:  2009-07-22       Impact factor: 2.747

10.  Genetic identification of a putative vinyl chloride reductase in Dehalococcoides sp. strain BAV1.

Authors:  Rosa Krajmalnik-Brown; Tina Hölscher; Ivy N Thomson; F Michael Saunders; Kirsti M Ritalahti; Frank E Löffler
Journal:  Appl Environ Microbiol       Date:  2004-10       Impact factor: 4.792

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3.  Ultrastructure of Organohalide-Respiring Dehalococcoidia Revealed by Cryo-Electron Tomography.

Authors:  Danielle L Sexton; Gao Chen; Fadime Kara Murdoch; Ameena Hashimi; Frank E Löffler; Elitza I Tocheva
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5.  Biological effects of tourmaline treatment on Dehalococcoides spp. during the reductive dechlorination of trichloroethylene.

Authors:  Tielong Li; Jiaxin Wen; Bingjie Li; Shihu Ding; Wei Wang
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