Literature DB >> 19630793

Protein-membrane interactions: blood clotting on nanoscale bilayers.

J H Morrissey1, V Pureza, R L Davis-Harrison, S G Sligar, C M Rienstra, A Z Kijac, Y Z Ohkubo, E Tajkhorshid.   

Abstract

The clotting cascade requires the assembly of protease-cofactor complexes on membranes with exposed anionic phospholipids. Despite their importance, protein-membrane interactions in clotting remain relatively poorly understood. Calcium ions are known to induce anionic phospholipids to cluster, and we propose that clotting proteins assemble preferentially on such anionic lipid-rich microdomains. Until recently, there was no way to control the partitioning of clotting proteins into or out of specific membrane microdomains, so experimenters only knew the average contributions of phospholipids to blood clotting. The development of nanoscale membrane bilayers (Nanodiscs) has now allowed us to probe, with nanometer resolution, how local variations in phospholipid composition regulate the activity of key protease-cofactor complexes in blood clotting. Furthermore, exciting new progress in solid-state NMR and large-scale molecular dynamics simulations allow structural insights into interactions between proteins and membrane surfaces with atomic resolution.

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Year:  2009        PMID: 19630793      PMCID: PMC2839880          DOI: 10.1111/j.1538-7836.2009.03390.x

Source DB:  PubMed          Journal:  J Thromb Haemost        ISSN: 1538-7836            Impact factor:   5.824


  31 in total

1.  An evaluation of detergents for NMR structural studies of membrane proteins.

Authors:  Ray D Krueger-Koplin; Paul L Sorgen; Suzanne T Krueger-Koplin; Iván O Rivera-Torres; Sean M Cahill; David B Hicks; Leo Grinius; Terry A Krulwich; Mark E Girvin
Journal:  J Biomol NMR       Date:  2004-01       Impact factor: 2.835

2.  Interaction of prothrombin and blood-clotting factor X with membranes of varying composition.

Authors:  G L Nelsestuen; M Broderius
Journal:  Biochemistry       Date:  1977-09-20       Impact factor: 3.162

3.  Direct solubilization of heterologously expressed membrane proteins by incorporation into nanoscale lipid bilayers.

Authors:  Natanya R Civjan; Timothy H Bayburt; Mary A Schuler; Stephen G Sligar
Journal:  Biotechniques       Date:  2003-09       Impact factor: 1.993

4.  Visualization of Ca2+-induced phospholipid domains.

Authors:  D M Haverstick; M Glaser
Journal:  Proc Natl Acad Sci U S A       Date:  1987-07       Impact factor: 11.205

5.  Self-assembly of single integral membrane proteins into soluble nanoscale phospholipid bilayers.

Authors:  Timothy H Bayburt; Stephen G Sligar
Journal:  Protein Sci       Date:  2003-11       Impact factor: 6.725

6.  Membrane-dependent coagulation reaction is independent of the concentration of phospholipid-bound substrate: fluid phase factor X regulates the extrinsic system.

Authors:  S D Forman; Y Nemerson
Journal:  Proc Natl Acad Sci U S A       Date:  1986-07       Impact factor: 11.205

7.  Phospholipid phase transitions in homogeneous nanometer scale bilayer discs.

Authors:  Andrew W Shaw; Mark A McLean; Stephen G Sligar
Journal:  FEBS Lett       Date:  2004-01-02       Impact factor: 4.124

8.  Homotropic cooperativity of monomeric cytochrome P450 3A4 in a nanoscale native bilayer environment.

Authors:  Bradley J Baas; Ilia G Denisov; Stephen G Sligar
Journal:  Arch Biochem Biophys       Date:  2004-10-15       Impact factor: 4.013

9.  The contributions of Ca2+, phospholipids and tissue-factor apoprotein to the activation of human blood-coagulation factor X by activated factor VII.

Authors:  V J Bom; R M Bertina
Journal:  Biochem J       Date:  1990-01-15       Impact factor: 3.857

10.  Directed self-assembly of monodisperse phospholipid bilayer Nanodiscs with controlled size.

Authors:  I G Denisov; Y V Grinkova; A A Lazarides; S G Sligar
Journal:  J Am Chem Soc       Date:  2004-03-24       Impact factor: 15.419

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  13 in total

Review 1.  Nanodiscs in Membrane Biochemistry and Biophysics.

Authors:  Ilia G Denisov; Stephen G Sligar
Journal:  Chem Rev       Date:  2017-02-08       Impact factor: 60.622

Review 2.  Nanodiscs as a new tool to examine lipid-protein interactions.

Authors:  Mary A Schuler; Ilia G Denisov; Stephen G Sligar
Journal:  Methods Mol Biol       Date:  2013

3.  Nanodiscs: A Controlled Bilayer Surface for the Study of Membrane Proteins.

Authors:  Mark A McLean; Michael C Gregory; Stephen G Sligar
Journal:  Annu Rev Biophys       Date:  2018-03-01       Impact factor: 12.981

4.  Dynamical view of membrane binding and complex formation of human factor VIIa and tissue factor.

Authors:  Y Z Ohkubo; J H Morrissey; E Tajkhorshid
Journal:  J Thromb Haemost       Date:  2010-02-24       Impact factor: 5.824

5.  Atomic view of calcium-induced clustering of phosphatidylserine in mixed lipid bilayers.

Authors:  John M Boettcher; Rebecca L Davis-Harrison; Mary C Clay; Andrew J Nieuwkoop; Y Zenmei Ohkubo; Emad Tajkhorshid; James H Morrissey; Chad M Rienstra
Journal:  Biochemistry       Date:  2011-03-03       Impact factor: 3.162

6.  GPU/CPU Algorithm for Generalized Born/Solvent-Accessible Surface Area Implicit Solvent Calculations.

Authors:  David E Tanner; James C Phillips; Klaus Schulten
Journal:  J Chem Theory Comput       Date:  2012-06-15       Impact factor: 6.006

7.  Lipid nanotechnologies for structural studies of membrane-associated proteins.

Authors:  Svetla Stoilova-McPhie; Kirill Grushin; Daniela Dalm; Jaimy Miller
Journal:  Proteins       Date:  2014-07-03

8.  Modeling of human factor Va inactivation by activated protein C.

Authors:  Maria Cristina Bravo; Thomas Orfeo; Kenneth G Mann; Stephen J Everse
Journal:  BMC Syst Biol       Date:  2012-05-20

9.  Activation of coagulation by lenalidomide-based regimens for the treatment of multiple myeloma.

Authors:  Yu Isozumi; Reina Arai; Kazumi Fujimoto; Takatoshi Koyama
Journal:  PLoS One       Date:  2013-05-16       Impact factor: 3.240

10.  Kinetic regulation of the binding of prothrombin to phospholipid membranes.

Authors:  Emma Smith; Rina Vekaria; Katherine A Brown; Colin Longstaff
Journal:  Mol Cell Biochem       Date:  2013-06-28       Impact factor: 3.396

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