Literature DB >> 19627983

Transcription of the C. elegans let-7 microRNA is temporally regulated by one of its targets, hbl-1.

Sarah F Roush1, Frank J Slack.   

Abstract

The let-7 family of microRNAs (miRNAs) are important regulators of developmental timing and cell differentiation and are often misexpressed in human cancer. In C. elegans, let-7 controls cell fate transitions from larval stage 4 (L4) to adulthood by post-transcriptionally down-regulating lineage-abnormal 41 (lin-41) and hunchback-like 1 (hbl-1). Primary let-7 (pri-let-7) transcripts are up-regulated in the L3, yet little is known about what controls this transcriptional up-regulation. We sought factors that either turn on let-7 transcription or keep it repressed until the correct time. Here we report that one of let-7's targets, the transcription factor Hunchback-like 1 (HBL-1), is responsible for inhibiting the transcription of let-7 in specific tissues until the L3. hbl-1 is a known developmental timing regulator and inhibits adult development in larval stages. Therefore, one important function of HBL-1 in maintaining larval stage fates is inhibition of let-7. Indeed, our results reveal let-7 as the first known target of the HBL-1 transcription factor in C. elegans and suggest a negative feedback loop mechanism for let-7 and HBL-1 regulation.

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Year:  2009        PMID: 19627983      PMCID: PMC2753757          DOI: 10.1016/j.ydbio.2009.07.012

Source DB:  PubMed          Journal:  Dev Biol        ISSN: 0012-1606            Impact factor:   3.582


  51 in total

1.  Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs.

Authors:  Rui Yi; Yi Qin; Ian G Macara; Bryan R Cullen
Journal:  Genes Dev       Date:  2003-12-17       Impact factor: 11.361

2.  Trans-splicing and polyadenylation of let-7 microRNA primary transcripts.

Authors:  John Bracht; Shaun Hunter; Rachel Eachus; Phillip Weeks; Amy E Pasquinelli
Journal:  RNA       Date:  2004-08-30       Impact factor: 4.942

3.  The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans.

Authors:  B J Reinhart; F J Slack; M Basson; A E Pasquinelli; J C Bettinger; A E Rougvie; H R Horvitz; G Ruvkun
Journal:  Nature       Date:  2000-02-24       Impact factor: 49.962

4.  Determinants of microRNA processing inhibition by the developmentally regulated RNA-binding protein Lin28.

Authors:  Elena Piskounova; Srinivas R Viswanathan; Maja Janas; Robert J LaPierre; George Q Daley; Piotr Sliz; Richard I Gregory
Journal:  J Biol Chem       Date:  2008-06-12       Impact factor: 5.157

5.  Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA.

Authors:  A E Pasquinelli; B J Reinhart; F Slack; M Q Martindale; M I Kuroda; B Maller; D C Hayward; E E Ball; B Degnan; P Müller; J Spring; A Srinivasan; M Fishman; J Finnerty; J Corbo; M Levine; P Leahy; E Davidson; G Ruvkun
Journal:  Nature       Date:  2000-11-02       Impact factor: 49.962

6.  Lin28 mediates the terminal uridylation of let-7 precursor MicroRNA.

Authors:  Inha Heo; Chirlmin Joo; Jun Cho; Minju Ha; Jinju Han; V Narry Kim
Journal:  Mol Cell       Date:  2008-10-24       Impact factor: 17.970

7.  A C. elegans genome-scale microRNA network contains composite feedback motifs with high flux capacity.

Authors:  Natalia J Martinez; Maria C Ow; M Inmaculada Barrasa; Molly Hammell; Reynaldo Sequerra; Lynn Doucette-Stamm; Frederick P Roth; Victor R Ambros; Albertha J M Walhout
Journal:  Genes Dev       Date:  2008-09-15       Impact factor: 11.361

8.  A feedback loop comprising lin-28 and let-7 controls pre-let-7 maturation during neural stem-cell commitment.

Authors:  Agnieszka Rybak; Heiko Fuchs; Lena Smirnova; Christine Brandt; Elena E Pohl; Robert Nitsch; F Gregory Wulczyn
Journal:  Nat Cell Biol       Date:  2008-07-06       Impact factor: 28.824

9.  Identification of mammalian microRNA host genes and transcription units.

Authors:  Antony Rodriguez; Sam Griffiths-Jones; Jennifer L Ashurst; Allan Bradley
Journal:  Genome Res       Date:  2004-09-13       Impact factor: 9.043

Review 10.  The let-7 family of microRNAs.

Authors:  Sarah Roush; Frank J Slack
Journal:  Trends Cell Biol       Date:  2008-09-04       Impact factor: 20.808

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  27 in total

Review 1.  Transcriptional regulation of gene expression in C. elegans.

Authors:  Valerie Reinke; Michael Krause; Peter Okkema
Journal:  WormBook       Date:  2013-06-04

2.  The nuclear receptor gene nhr-25 plays multiple roles in the Caenorhabditis elegans heterochronic gene network to control the larva-to-adult transition.

Authors:  Kazumasa Hada; Masako Asahina; Hiroshi Hasegawa; Yasunori Kanaho; Frank J Slack; Ryusuke Niwa
Journal:  Dev Biol       Date:  2010-06-02       Impact factor: 3.582

3.  Caenorhabditis elegans period homolog lin-42 regulates the timing of heterochronic miRNA expression.

Authors:  Katherine A McCulloch; Ann E Rougvie
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-15       Impact factor: 11.205

4.  Caenorhabditis elegans microRNAs of the let-7 family act in innate immune response circuits and confer robust developmental timing against pathogen stress.

Authors:  Zhiji Ren; Victor R Ambros
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-20       Impact factor: 11.205

Review 5.  Analysis of microRNA expression and function.

Authors:  Priscilla M Van Wynsberghe; Shih-Peng Chan; Frank J Slack; Amy E Pasquinelli
Journal:  Methods Cell Biol       Date:  2011       Impact factor: 1.441

Review 6.  miRNAs give worms the time of their lives: small RNAs and temporal control in Caenorhabditis elegans.

Authors:  Tamar D Resnick; Katherine A McCulloch; Ann E Rougvie
Journal:  Dev Dyn       Date:  2010-05       Impact factor: 3.780

7.  APL-1, the Alzheimer's Amyloid precursor protein in Caenorhabditis elegans, modulates multiple metabolic pathways throughout development.

Authors:  Collin Y Ewald; Daniel A Raps; Chris Li
Journal:  Genetics       Date:  2012-03-30       Impact factor: 4.562

Review 8.  Understanding the molecular basis of Alzheimer's disease using a Caenorhabditis elegans model system.

Authors:  Collin Y Ewald; Chris Li
Journal:  Brain Struct Funct       Date:  2009-12-11       Impact factor: 3.270

9.  C. elegans sym-1 is a downstream target of the hunchback-like-1 developmental timing transcription factor.

Authors:  Ryusuke Niwa; Kazumasa Hada; Kouichi Moliyama; Ryosuke L Ohniwa; Yi-Meng Tan; Katherine Olsson-Carter; Woo Chi; Valerie Reinke; Frank J Slack
Journal:  Cell Cycle       Date:  2009-12-09       Impact factor: 4.534

10.  Multiple cis-elements and trans-acting factors regulate dynamic spatio-temporal transcription of let-7 in Caenorhabditis elegans.

Authors:  Zoya S Kai; Emily F Finnegan; Stacey Huang; Amy E Pasquinelli
Journal:  Dev Biol       Date:  2012-11-30       Impact factor: 3.582

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