Literature DB >> 23801596

Transcriptional regulation of gene expression in C. elegans.

Valerie Reinke1, Michael Krause, Peter Okkema.   

Abstract

Protein coding gene sequences are converted to mRNA by the highly regulated process of transcription. The precise temporal and spatial control of transcription for many genes is an essential part of development in metazoans. Thus, understanding the molecular mechanisms underlying transcriptional control is essential to understanding cell fate determination during embryogenesis, post-embryonic development, many environmental interactions, and disease-related processes. Studies of transcriptional regulation in C. elegans exploit its genomic simplicity and physical characteristics to define regulatory events with single-cell and minute-time-scale resolution. When combined with the genetics of the system, C. elegans offers a unique and powerful vantage point from which to study how chromatin-associated proteins and their modifications interact with transcription factors and their binding sites to yield precise control of gene expression through transcriptional regulation.

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Year:  2013        PMID: 23801596      PMCID: PMC3893038          DOI: 10.1895/wormbook.1.45.2

Source DB:  PubMed          Journal:  WormBook        ISSN: 1551-8507


  252 in total

1.  The UNC-3 Olf/EBF protein represses alternate neuronal programs to specify chemosensory neuron identity.

Authors:  Kyuhyung Kim; Marc E Colosimo; Helen Yeung; Piali Sengupta
Journal:  Dev Biol       Date:  2005-10-01       Impact factor: 3.582

2.  Identification of direct DAF-16 targets controlling longevity, metabolism and diapause by chromatin immunoprecipitation.

Authors:  Seung Wook Oh; Arnab Mukhopadhyay; Bharat L Dixit; Tamal Raha; Michael R Green; Heidi A Tissenbaum
Journal:  Nat Genet       Date:  2005-12-25       Impact factor: 38.330

3.  The C. elegans homologs of nephrocystin-1 and nephrocystin-4 are cilia transition zone proteins involved in chemosensory perception.

Authors:  Marlene E Winkelbauer; Jenny C Schafer; Courtney J Haycraft; Peter Swoboda; Bradley K Yoder
Journal:  J Cell Sci       Date:  2005-11-15       Impact factor: 5.285

4.  The Caenorhabditis elegans heterochronic regulator LIN-14 is a novel transcription factor that controls the developmental timing of transcription from the insulin/insulin-like growth factor gene ins-33 by direct DNA binding.

Authors:  Marta Hristova; Darcy Birse; Yang Hong; Victor Ambros
Journal:  Mol Cell Biol       Date:  2005-12       Impact factor: 4.272

5.  The bZip proteins CES-2 and ATF-2 alter the timing of transcription for a cell-specific target gene in C. elegans.

Authors:  Xiaodong Wang; Hongtao Jia; Helen M Chamberlin
Journal:  Dev Biol       Date:  2005-11-28       Impact factor: 3.582

6.  Wnt signaling and CEH-22/tinman/Nkx2.5 specify a stem cell niche in C. elegans.

Authors:  Ngan Lam; Michael A Chesney; Judith Kimble
Journal:  Curr Biol       Date:  2006-02-07       Impact factor: 10.834

7.  nfi-I affects behavior and life-span in C. elegans but is not essential for DNA replication or survival.

Authors:  Elena Lazakovitch; John M Kalb; Reiko Matsumoto; Keiko Hirono; Yuji Kohara; Richard M Gronostajski
Journal:  BMC Dev Biol       Date:  2005-10-20       Impact factor: 1.978

8.  The EH1 motif in metazoan transcription factors.

Authors:  Richard R Copley
Journal:  BMC Genomics       Date:  2005-11-27       Impact factor: 3.969

9.  A compendium of Caenorhabditis elegans regulatory transcription factors: a resource for mapping transcription regulatory networks.

Authors:  John S Reece-Hoyes; Bart Deplancke; Jane Shingles; Christian A Grove; Ian A Hope; Albertha J M Walhout
Journal:  Genome Biol       Date:  2005-12-30       Impact factor: 13.583

10.  Protein family expansions and biological complexity.

Authors:  Christine Vogel; Cyrus Chothia
Journal:  PLoS Comput Biol       Date:  2006-05-26       Impact factor: 4.475

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  13 in total

1.  Function, dynamics and evolution of network motif modules in integrated gene regulatory networks of worm and plant.

Authors:  Jonas Defoort; Yves Van de Peer; Vanessa Vermeirssen
Journal:  Nucleic Acids Res       Date:  2018-07-27       Impact factor: 16.971

2.  Regulation of UNC-130/FOXD-mediated mesodermal patterning in C. elegans.

Authors:  Rossio K Kersey; Thomas M Brodigan; Tetsunari Fukushige; Michael W Krause
Journal:  Dev Biol       Date:  2016-06-21       Impact factor: 3.582

Review 3.  RNA polymerase II transcription elongation and Pol II CTD Ser2 phosphorylation: A tail of two kinases.

Authors:  Elizabeth A Bowman; William G Kelly
Journal:  Nucleus       Date:  2014-05-30       Impact factor: 4.197

4.  The NF-Y complex negatively regulates Caenorhabditis elegans tbx-2 expression.

Authors:  Angenee C Milton; Adelaide V Packard; Lynn Clary; Peter G Okkema
Journal:  Dev Biol       Date:  2013-08-08       Impact factor: 3.582

5.  BINDING SITE ANALYSIS OF THE CAENORHABDITIS ELEGANS NR4A NUCLEAR RECEPTOR NHR-6 DURING DEVELOPMENT.

Authors:  Brandon Praslicka; Jeremy S Harmson; Joohyun Kim; Vittobai Rashika Rangaraj; Aikseng Ooi; Chris R Gissendanner
Journal:  Nucl Receptor Res       Date:  2017-07-23

6.  Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities.

Authors:  Kamesh Narasimhan; Samuel A Lambert; Ally W H Yang; Jeremy Riddell; Sanie Mnaimneh; Hong Zheng; Mihai Albu; Hamed S Najafabadi; John S Reece-Hoyes; Juan I Fuxman Bass; Albertha J M Walhout; Matthew T Weirauch; Timothy R Hughes
Journal:  Elife       Date:  2015-04-23       Impact factor: 8.140

7.  Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans.

Authors:  Aaron C Daugherty; Robin W Yeo; Jason D Buenrostro; William J Greenleaf; Anshul Kundaje; Anne Brunet
Journal:  Genome Res       Date:  2017-11-15       Impact factor: 9.043

8.  Gene Function Prediction Based on Developmental Transcriptomes of the Two Sexes in C. elegans.

Authors:  Byunghyuk Kim; Bangxia Suo; Scott W Emmons
Journal:  Cell Rep       Date:  2016-10-11       Impact factor: 9.423

9.  Pheromone-sensing neurons regulate peripheral lipid metabolism in Caenorhabditis elegans.

Authors:  Rosalind Hussey; Jon Stieglitz; Jaleh Mesgarzadeh; Tiffany T Locke; Ying K Zhang; Frank C Schroeder; Supriya Srinivasan
Journal:  PLoS Genet       Date:  2017-05-18       Impact factor: 5.917

10.  Effects of liquid cultivation on gene expression and phenotype of C. elegans.

Authors:  İrem Çelen; Jung H Doh; Chandran R Sabanayagam
Journal:  BMC Genomics       Date:  2018-07-31       Impact factor: 3.969

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