Literature DB >> 19627092

Substrate-selective supramolecular tandem assays: monitoring enzyme inhibition of arginase and diamine oxidase by fluorescent dye displacement from calixarene and cucurbituril macrocycles.

Werner M Nau1, Garima Ghale, Andreas Hennig, Hüseyin Bakirci, David M Bailey.   

Abstract

A combination of moderately selective host-guest binding with the impressive specificity of enzymatic transformations allows the real-time monitoring of enzymatic reactions in a homogeneous solution. The resulting enzyme assays ("supramolecular tandem assays") exploit the dynamic binding of a fluorescent dye with a macrocyclic host in competition with the binding of the substrate and product. Two examples of enzymatic reactions were investigated: the hydrolysis of arginine to ornithine catalyzed by arginase and the oxidation of cadaverine to 5-aminopentanal by diamine oxidase, in which the substrates have a higher affinity to the macrocycle than the products ("substrate-selective assays"). The depletion of the substrate allows the fluorescent dye to enter the macrocycle in the course of the enzymatic reaction, which leads to the desired fluorescence response. For arginase, p-sulfonatocalix[4]arene was used as the macrocycle, which displayed binding constants of 6400 M(-1) with arginine, 550 M(-1) with ornithine, and 60,000 M(-1) with the selected fluorescent dye (1-aminomethyl-2,3-diazabicyclo[2.2.2]oct-2-ene); the dye shows a weaker fluorescence in its complexed state, which leads to a switch-off fluorescence response in the course of the enzymatic reaction. For diamine oxidase, cucurbit[7]uril (CB7) was used as the macrocycle, which showed binding constants of 4.5 x 10(6) M(-1) with cadaverine, 1.1 x 10(5) M(-1) with 1-aminopentane (as a model for the thermally unstable 1-aminopentanal), and 2.9 x 10(5) M(-1) with the selected fluorescent dye (acridine orange, AO); AO shows a stronger fluorescence in its complexed state, which leads to a switch-on fluorescence response upon enzymatic oxidation. It is demonstrated that tandem assays can be successfully used to probe the inhibition of enzymes. Inhibition constants were estimated for the addition of known inhibitors, i.e., S-(2-boronoethyl)-L-cysteine and 2(S)-amino-6-boronohexanoic acid for arginase and potassium cyanide for diamine oxidase. Through the sequential coupling of a "product-selective" with a "substrate-selective" assay it was furthermore possible to monitor a multistep biochemical pathway, namely the decarboxylation of lysine to cadaverine by lysine decarboxylase followed by the oxidation of cadaverine by diamine oxidase. This "domino tandem assay" was performed in the same solution with a single reporter pair (CB7/AO).

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Year:  2009        PMID: 19627092     DOI: 10.1021/ja904165c

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  23 in total

1.  Site-Selective Sensing of Histone Methylation Enzyme Activity via an Arrayed Supramolecular Tandem Assay.

Authors:  Yang Liu; Lizeth Perez; Adam D Gill; Magi Mettry; Lin Li; Yinsheng Wang; Richard J Hooley; Wenwan Zhong
Journal:  J Am Chem Soc       Date:  2017-08-08       Impact factor: 15.419

2.  Orthogonal switching of a single supramolecular complex.

Authors:  Feng Tian; Dezhi Jiao; Frank Biedermann; Oren A Scherman
Journal:  Nat Commun       Date:  2012       Impact factor: 14.919

3.  Host-guest chemistry in the gas phase: complex formation of cucurbit[6]uril with proton-bound water dimer.

Authors:  Dong Hun Noh; Shin Jung C Lee; Jong Wha Lee; Hugh I Kim
Journal:  J Am Soc Mass Spectrom       Date:  2014-01-17       Impact factor: 3.109

4.  Selective binding of choline by a phosphate-coordination-based triple helicate featuring an aromatic box.

Authors:  Chuandong Jia; Wei Zuo; Dong Yang; Yanming Chen; Liping Cao; Radu Custelcean; Jiří Hostaš; Pavel Hobza; Robert Glaser; Yao-Yu Wang; Xiao-Juan Yang; Biao Wu
Journal:  Nat Commun       Date:  2017-10-16       Impact factor: 14.919

5.  Design and characterization of a calixarene inclusion compound for calibration of long-range carbon-fluorine distance measurements by solid-state NMR.

Authors:  Daniel J Fowler; Peter G Khalifah; Lynmarie K Thompson
Journal:  J Magn Reson       Date:  2010-08-13       Impact factor: 2.229

Review 6.  Molecular Probes, Chemosensors, and Nanosensors for Optical Detection of Biorelevant Molecules and Ions in Aqueous Media and Biofluids.

Authors:  Joana Krämer; Rui Kang; Laura M Grimm; Luisa De Cola; Pierre Picchetti; Frank Biedermann
Journal:  Chem Rev       Date:  2022-01-07       Impact factor: 60.622

Review 7.  Functional protein nanostructures: a chemical toolbox.

Authors:  Seah Ling Kuan; Fernando R G Bergamini; Tanja Weil
Journal:  Chem Soc Rev       Date:  2018-11-19       Impact factor: 54.564

8.  Supramolecular Adducts of Cucurbit[7]uril and Amino Acids in the Gas Phase.

Authors:  Ekaterina Kovalenko; Marta Vilaseca; Mireia Díaz-Lobo; A N Masliy; Cristian Vicent; Vladimir P Fedin
Journal:  J Am Soc Mass Spectrom       Date:  2015-10-06       Impact factor: 3.109

9.  Fluorescence detected circular dichroism (FDCD) for supramolecular host-guest complexes.

Authors:  Amrutha Prabodh; Yichuan Wang; Stephan Sinn; Paolo Albertini; Christian Spies; Eduard Spuling; Liu-Pan Yang; Wei Jiang; Stefan Bräse; Frank Biedermann
Journal:  Chem Sci       Date:  2021-06-09       Impact factor: 9.825

10.  A stimuli-responsive nanopore based on a photoresponsive host-guest system.

Authors:  Yi-Lun Ying; Junji Zhang; Fu-Na Meng; Chan Cao; Xuyang Yao; Itamar Willner; He Tian; Yi-Tao Long
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

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