Literature DB >> 19624177

Density functional theory calculation on many-cores hybrid central processing unit-graphic processing unit architectures.

Luigi Genovese1, Matthieu Ospici, Thierry Deutsch, Jean-François Méhaut, Alexey Neelov, Stefan Goedecker.   

Abstract

We present the implementation of a full electronic structure calculation code on a hybrid parallel architecture with graphic processing units (GPUs). This implementation is performed on a free software code based on Daubechies wavelets. Such code shows very good performances, systematic convergence properties, and an excellent efficiency on parallel computers. Our GPU-based acceleration fully preserves all these properties. In particular, the code is able to run on many cores which may or may not have a GPU associated, and thus on parallel and massive parallel hybrid machines. With double precision calculations, we may achieve considerable speedup, between a factor of 20 for some operations and a factor of 6 for the whole density functional theory code.

Year:  2009        PMID: 19624177     DOI: 10.1063/1.3166140

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  5 in total

1.  GPU-accelerated molecular modeling coming of age.

Authors:  John E Stone; David J Hardy; Ivan S Ufimtsev; Klaus Schulten
Journal:  J Mol Graph Model       Date:  2010-07-08       Impact factor: 2.518

2.  The feasibility of genome-scale biological network inference using Graphics Processing Units.

Authors:  Raghuram Thiagarajan; Amir Alavi; Jagdeep T Podichetty; Jason N Bazil; Daniel A Beard
Journal:  Algorithms Mol Biol       Date:  2017-03-20       Impact factor: 1.405

3.  GPU Accelerated Quantum Virtual Screening: Application for the Natural Inhibitors of New Dehli Metalloprotein (NDM-1).

Authors:  Mingsong Shi; Dingguo Xu; Jun Zeng
Journal:  Front Chem       Date:  2018-11-20       Impact factor: 5.221

4.  On the Efficient Evaluation of the Exchange Correlation Potential on Graphics Processing Unit Clusters.

Authors:  David B Williams-Young; Wibe A de Jong; Hubertus J J van Dam; Chao Yang
Journal:  Front Chem       Date:  2020-12-10       Impact factor: 5.221

5.  Performance analysis of electronic structure codes on HPC systems: a case study of SIESTA.

Authors:  Fabiano Corsetti
Journal:  PLoS One       Date:  2014-04-18       Impact factor: 3.240

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.