Literature DB >> 19622857

Structure of endoglucanase Cel9A from the thermoacidophilic Alicyclobacillus acidocaldarius.

Jose Henrique Pereira1, Rajat Sapra, Joanne V Volponi, Carol L Kozina, Blake Simmons, Paul D Adams.   

Abstract

The production of biofuels using biomass is an alternative route to support the growing global demand for energy and to also reduce the environmental problems caused by the burning of fossil fuels. Cellulases are likely to play an important role in the degradation of biomass and the production of sugars for subsequent fermentation to fuel. Here, the crystal structure of an endoglucanase, Cel9A, from Alicyclobacillus acidocaldarius (Aa_Cel9A) is reported which displays a modular architecture composed of an N-terminal Ig-like domain connected to the catalytic domain. This paper describes the overall structure and the detailed contacts between the two modules. Analysis suggests that the interaction involving the residues Gln13 (from the Ig-like module) and Phe439 (from the catalytic module) is important in maintaining the correct conformation of the catalytic module required for protein activity. Moreover, the Aa_Cel9A structure shows three metal-binding sites that are associated with the thermostability and/or substrate affinity of the enzyme.

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Year:  2009        PMID: 19622857      PMCID: PMC2714717          DOI: 10.1107/S0907444909012773

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  15 in total

1.  PHENIX: building new software for automated crystallographic structure determination.

Authors:  Paul D Adams; Ralf W Grosse-Kunstleve; Li Wei Hung; Thomas R Ioerger; Airlie J McCoy; Nigel W Moriarty; Randy J Read; James C Sacchettini; Nicholas K Sauter; Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-10-21

2.  Crystallization and preliminary X-ray analysis of Alicyclobacillus acidocaldarius endoglucanase CelA.

Authors:  Kelvin Eckert; Heidi A Ernst; Erwin Schneider; Sine Larsen; Leila Lo Leggio
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-12-19

3.  Crystal structure of the cellulase Cel9M enlightens structure/function relationships of the variable catalytic modules in glycoside hydrolases.

Authors:  G Parsiegla; A Belaïch; J P Belaïch; R Haser
Journal:  Biochemistry       Date:  2002-09-17       Impact factor: 3.162

4.  Interactions between immunoglobulin-like and catalytic modules in Clostridium thermocellum cellulosomal cellobiohydrolase CbhA.

Authors:  Irina A Kataeva; Vladimir N Uversky; John M Brewer; Florian Schubot; John P Rose; B-C Wang; Lars G Ljungdahl
Journal:  Protein Eng Des Sel       Date:  2004-12-13       Impact factor: 1.650

5.  Structures of mutants of cellulase Cel48F of Clostridium cellulolyticum in complex with long hemithiocellooligosaccharides give rise to a new view of the substrate pathway during processive action.

Authors:  Goetz Parsiegla; Corinne Reverbel; Chantal Tardif; Hugues Driguez; Richard Haser
Journal:  J Mol Biol       Date:  2007-10-22       Impact factor: 5.469

6.  Structural basis for the exocellulase activity of the cellobiohydrolase CbhA from Clostridium thermocellum.

Authors:  Florian D Schubot; Irina A Kataeva; Jessie Chang; Ashit K Shah; Lars G Ljungdahl; John P Rose; Bi-Cheng Wang
Journal:  Biochemistry       Date:  2004-02-10       Impact factor: 3.162

7.  Structural and functional analysis of the metal-binding sites of Clostridium thermocellum endoglucanase CelD.

Authors:  S Chauvaux; H Souchon; P M Alzari; P Chariot; P Beguin
Journal:  J Biol Chem       Date:  1995-04-28       Impact factor: 5.157

8.  The crystal structure of the processive endocellulase CelF of Clostridium cellulolyticum in complex with a thiooligosaccharide inhibitor at 2.0 A resolution.

Authors:  G Parsiegla; M Juy; C Reverbel-Leroy; C Tardif; J P Belaïch; H Driguez; R Haser
Journal:  EMBO J       Date:  1998-10-01       Impact factor: 11.598

9.  MolProbity: all-atom contacts and structure validation for proteins and nucleic acids.

Authors:  Ian W Davis; Andrew Leaver-Fay; Vincent B Chen; Jeremy N Block; Gary J Kapral; Xueyi Wang; Laura W Murray; W Bryan Arendall; Jack Snoeyink; Jane S Richardson; David C Richardson
Journal:  Nucleic Acids Res       Date:  2007-04-22       Impact factor: 16.971

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  11 in total

1.  Characterization of all family-9 glycoside hydrolases synthesized by the cellulosome-producing bacterium Clostridium cellulolyticum.

Authors:  Julie Ravachol; Romain Borne; Chantal Tardif; Pascale de Philip; Henri-Pierre Fierobe
Journal:  J Biol Chem       Date:  2014-01-22       Impact factor: 5.157

2.  Immobilization of endoglucanase Cel9A on chitosan nanoparticles leads to its stabilization against organic solvents: the use of polyols to improve the stability.

Authors:  Masoumeh Mohammadi; Saeed Najavand; Mohammad Pazhang
Journal:  3 Biotech       Date:  2019-06-17       Impact factor: 2.406

3.  Ig-like Domain in Endoglucanase Cel9A from Alicyclobacillus acidocaldarius Makes Dependent the Enzyme Stability on Calcium.

Authors:  Mohammad Pazhang; Fereshteh S Younesi; Faramarz Mehrnejad; Saeed Najavand; Alireza Tarinejad; Mehrnaz Haghi; Fatemeh Rashno; Khosro Khajeh
Journal:  Mol Biotechnol       Date:  2018-09       Impact factor: 2.695

4.  Polarity Alteration of a Calcium Site Induces a Hydrophobic Interaction Network and Enhances Cel9A Endoglucanase Thermostability.

Authors:  Hsiu-Jung Wang; Yu-Yuan Hsiao; Yu-Pei Chen; Tien-Yang Ma; Ching-Ping Tseng
Journal:  Appl Environ Microbiol       Date:  2016-01-04       Impact factor: 4.792

5.  Characterization of a Theme C Glycoside Hydrolase Family 9 Endo-Beta-Glucanase from a Biogas Reactor Metagenome.

Authors:  Carola Schröder; Christin Burkhardt; Philip Busch; Georg Schirrmacher; Jörg Claren; Garabed Antranikian
Journal:  Protein J       Date:  2018-10       Impact factor: 2.371

6.  Structure, activity, and stability of metagenome-derived glycoside hydrolase family 9 endoglucanase with an N-terminal Ig-like domain.

Authors:  Hiroyuki Okano; Eiko Kanaya; Masashi Ozaki; Clement Angkawidjaja; Shigenori Kanaya
Journal:  Protein Sci       Date:  2015-01-13       Impact factor: 6.725

7.  Deleting the Ig-Like Domain of Alicyclobacillus acidocaldarius Endoglucanase Cel9A Causes a Simultaneous Increase in the Activity and Stability.

Authors:  Fereshteh S Younesi; Mohammad Pazhang; Saeed Najavand; Parastou Rahimizadeh; Mohsen Akbarian; Mehdi Mohammadian; Khosro Khajeh
Journal:  Mol Biotechnol       Date:  2016-01       Impact factor: 2.695

8.  Crystal structure of endo-1,4-β-glucanase from Eisenia fetida.

Authors:  Takao Arimori; Akihiro Ito; Masami Nakazawa; Mitsuhiro Ueda; Taro Tamada
Journal:  J Synchrotron Radiat       Date:  2013-10-01       Impact factor: 2.616

9.  Structure and function of a novel cellulase 5 from sugarcane soil metagenome.

Authors:  Thabata M Alvarez; Joice H Paiva; Diego M Ruiz; João Paulo L F Cairo; Isabela O Pereira; Douglas A A Paixão; Rodrigo F de Almeida; Celisa C C Tonoli; Roberto Ruller; Camila R Santos; Fabio M Squina; Mario T Murakami
Journal:  PLoS One       Date:  2013-12-17       Impact factor: 3.240

10.  Glycoside hydrolase gene transcription by Alicyclobacillus acidocaldarius during growth on wheat arabinoxylan and monosaccharides: a proposed xylan hydrolysis mechanism.

Authors:  Brady D Lee; William A Apel; Peter P Sheridan; Linda C DeVeaux
Journal:  Biotechnol Biofuels       Date:  2018-04-16       Impact factor: 6.040

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