Literature DB >> 19622667

Nocardia iowensis sp. nov., an organism rich in biocatalytically important enzymes and nitric oxide synthase.

Andrew S Lamm1, Arshdeep Khare, Patricia Conville, Peter C K Lau, Hélène Bergeron, John P N Rosazza.   

Abstract

Nocardia strain NRRL 5646, isolated from a garden soil sample in Osceola, Iowa, USA, was initially of interest as an antibiotic producer. It contained biocatalytically important enzymes and represented the first described nitric oxide synthase enzyme system in bacteria. The present polyphasic taxonomic study was undertaken to differentiate strain NRRL 5646(T) from related species of the genus Nocardia. Chemotaxonomic analyses included determinations of the fatty acid methyl ester profile (C(16 : 1)omega6c/C(16 : 1)omega7c, C(16 : 0), C(18 : 1)omega9c and C(18 : 0) 10-methyl as major components), quinone [cyclo MK-8(H(4)) as the major component], polar lipid (diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and phosphatidylinositol mannoside as major components) and mycolic acid. These results supported its placement within the genus Nocardia. Biochemical testing and 16S rRNA, 65-kDa heat-shock protein (hsp65) and preprotein translocase (secA1) gene sequence analyses differentiated strain NRRL 5646(T) from recognized Nocardia species. Previous studies have demonstrated that other genetic sequences (carboxylic acid reductase, Nocardia phosphopantetheinyl transferase and GTP cyclohydrolase I) from strain NRRL 5646(T) can also be used to substantiate its uniqueness. The level of 16S rRNA gene sequence similarity between strain NRRL 5646(T) and the type strains of Nocardia tenerifensis and Nocardia brasiliensis was 98.8 %. However, strain NRRL 5646(T) could be clearly distinguished from these Nocardia species based on DNA-DNA hybridization data. Consequently, strain NRRL 5646(T) is considered to represent a novel species of the genus Nocardia, for which the name Nocardia iowensis sp. nov. is proposed. The type strain is NRRL 5646(T) (=UI 122540(T)=NRRL B-24671(T)=DSM 45197(T)).

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Year:  2009        PMID: 19622667      PMCID: PMC2759412          DOI: 10.1099/ijs.0.007427-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  28 in total

1.  Nocardia tenerifensis sp. nov.

Authors:  Peter Kämpfer; Sandra Buczolits; Udo Jäckel; Iris Grün-Wollny; Hans-Jürgen Busse
Journal:  Int J Syst Evol Microbiol       Date:  2004-03       Impact factor: 2.747

2.  Nocardia sp. carboxylic acid reductase: cloning, expression, and characterization of a new aldehyde oxidoreductase family.

Authors:  Aimin He; Tao Li; Lacy Daniels; Ian Fotheringham; John P N Rosazza
Journal:  Appl Environ Microbiol       Date:  2004-03       Impact factor: 4.792

3.  The complete genomic sequence of Nocardia farcinica IFM 10152.

Authors:  Jun Ishikawa; Atsushi Yamashita; Yuzuru Mikami; Yasutaka Hoshino; Haruyo Kurita; Kunimoto Hotta; Tadayoshi Shiba; Masahira Hattori
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-04       Impact factor: 11.205

4.  Identification of nocardia species by restriction endonuclease analysis of an amplified portion of the 16S rRNA gene.

Authors:  P S Conville; S H Fischer; C P Cartwright; F G Witebsky
Journal:  J Clin Microbiol       Date:  2000-01       Impact factor: 5.948

Review 5.  Construction of phylogenetic trees.

Authors:  W M Fitch; E Margoliash
Journal:  Science       Date:  1967-01-20       Impact factor: 47.728

6.  Nocardia beijingensis sp. nov., a novel isolate from soil.

Authors:  L Wang; Y Zhang; Z Lu; Y Shi; Z Liu; L Maldonado; M Goodfellow
Journal:  Int J Syst Evol Microbiol       Date:  2001-09       Impact factor: 2.747

7.  A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.

Authors:  M Kimura
Journal:  J Mol Evol       Date:  1980-12       Impact factor: 2.395

8.  Thiols in nitric oxide synthase-containing Nocardia sp. strain NRRL 5646.

Authors:  Sungwon Lee; Hélène Bergeron; Peter C K Lau; John P N Rosazza
Journal:  Appl Environ Microbiol       Date:  2007-03-02       Impact factor: 4.792

9.  Phylogeny of the genus Nocardia based on reassessed 16S rRNA gene sequences reveals underspeciation and division of strains classified as Nocardia asteroides into three established species and two unnamed taxons.

Authors:  Andreas Roth; Sebastian Andrees; Reiner M Kroppenstedt; Dag Harmsen; Harald Mauch
Journal:  J Clin Microbiol       Date:  2003-02       Impact factor: 5.948

10.  Cloning, expression, purification, and characterization of Nocardia sp. GTP cyclohydrolase I.

Authors:  Aimin He; D Randall Simpson; Lacy Daniels; John P N Rosazza
Journal:  Protein Expr Purif       Date:  2004-06       Impact factor: 1.650

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  3 in total

1.  secA1 gene sequence polymorphisms for species identification of Nocardia species and recognition of intraspecies genetic diversity.

Authors:  Fanrong Kong; Huiping Wang; Erqing Zhang; Vitali Sintchenko; Meng Xiao; Tania C Sorrell; Xiaoyou Chen; Sharon C-A Chen
Journal:  J Clin Microbiol       Date:  2010-09-01       Impact factor: 5.948

2.  Nocardia aciditolerans sp. nov., isolated from a spruce forest soil.

Authors:  Patrycja Golinska; Dylan Wang; Michael Goodfellow
Journal:  Antonie Van Leeuwenhoek       Date:  2013-02-01       Impact factor: 2.271

3.  Comparison of three phenotypic and deoxyribonucleic acid extraction methods for isolation and Identification of Nocardia spp.

Authors:  Jamshid Faghri; Samane Bourbour; Sharare Moghim; Mohsen Meidani; Hajiye Ghasemian Safaei; Nafise Hosseini; Bahram Nasr Esfahani; Hussein Fazeli; Mansour Sedighi
Journal:  Adv Biomed Res       Date:  2014-07-31
  3 in total

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