Literature DB >> 19602569

Short protein segments can drive a non-fibrillizing protein into the amyloid state.

Poh K Teng1, David Eisenberg.   

Abstract

Protein fibrils termed amyloid-like are associated with numerous degenerative diseases as well as some normal cellular functions. Specific short segments of amyloid-forming proteins have been shown to form fibrils themselves. However, it has not been shown in general that these segments are capable of driving a protein from its native structure into the amyloid state. We applied the 3D profile method to identify fibril-forming segments within the amyloid-forming human proteins tau, alpha-synuclein, PrP prion and amyloid-beta. Ten segments, six to eight residues in length, were chosen and inserted into the C-terminal hinge loop of the highly constrained enzyme RNase A, and tested for fibril growth and Congo red birefringence. We find that all 10 unique inserts cause RNase A to form amyloid-like fibrils which display characteristic yellow to apple-green Congo red birefringence when observed with cross polarizers. These six to eight residue inserts can fibrillize RNase A and are sufficient for amyloid fibril spine formation.

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Year:  2009        PMID: 19602569      PMCID: PMC2719503          DOI: 10.1093/protein/gzp037

Source DB:  PubMed          Journal:  Protein Eng Des Sel        ISSN: 1741-0126            Impact factor:   1.650


  35 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-25       Impact factor: 11.205

3.  3D structure of Alzheimer's amyloid-beta(1-42) fibrils.

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Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-17       Impact factor: 11.205

4.  The 3D profile method for identifying fibril-forming segments of proteins.

Authors:  Michael J Thompson; Stuart A Sievers; John Karanicolas; Magdalena I Ivanova; David Baker; David Eisenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2006-03-07       Impact factor: 11.205

5.  Correlation of amyloid fibril beta-structure with the unfolded state of alpha-synuclein.

Authors:  Hai-Young Kim; Henrike Heise; Claudio O Fernandez; Marc Baldus; Markus Zweckstetter
Journal:  Chembiochem       Date:  2007-09-24       Impact factor: 3.164

6.  Common core structure of amyloid fibrils by synchrotron X-ray diffraction.

Authors:  M Sunde; L C Serpell; M Bartlam; P E Fraser; M B Pepys; C C Blake
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7.  The relation of the properties of Congo red-stained amyloid fibrils to the -conformation.

Authors:  G G Glenner; E D Eanes; D L Page
Journal:  J Histochem Cytochem       Date:  1972-10       Impact factor: 2.479

8.  Both familial Parkinson's disease mutations accelerate alpha-synuclein aggregation.

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Journal:  J Biol Chem       Date:  1999-04-02       Impact factor: 5.157

9.  The hydrophobic environment of Met35 of Alzheimer's Abeta(1-42) is important for the neurotoxic and oxidative properties of the peptide.

Authors:  Jaroslaw Kanski; Marina Aksenova; D Allan Butterfield
Journal:  Neurotox Res       Date:  2002-05       Impact factor: 3.911

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Journal:  PLoS Biol       Date:  2008-08-05       Impact factor: 8.029

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  46 in total

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Authors:  Sean M Cascarina; Eric D Ross
Journal:  Cell Mol Life Sci       Date:  2014-01-04       Impact factor: 9.261

2.  Identifying the amylome, proteins capable of forming amyloid-like fibrils.

Authors:  Lukasz Goldschmidt; Poh K Teng; Roland Riek; David Eisenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-03       Impact factor: 11.205

3.  Impact of sequence on the molecular assembly of short amyloid peptides.

Authors:  Victoria A Wagoner; Mookyung Cheon; Iksoo Chang; Carol K Hall
Journal:  Proteins       Date:  2014-02-18

Review 4.  Droplet organelles?

Authors:  Edward M Courchaine; Alice Lu; Karla M Neugebauer
Journal:  EMBO J       Date:  2016-06-29       Impact factor: 11.598

5.  Generating extracellular amyloid aggregates using E. coli cells.

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Journal:  Genes Dev       Date:  2012-11-19       Impact factor: 11.361

6.  Secondary nucleating sequences affect kinetics and thermodynamics of tau aggregation.

Authors:  Christopher L Moore; Michael H Huang; Shauna A Robbennolt; Kellen R Voss; Benjamin Combs; T Chris Gamblin; Warren J Goux
Journal:  Biochemistry       Date:  2011-11-29       Impact factor: 3.162

7.  Comparison of β-sheets of capped polyalanine with those of the tau-amyloid structures VQIVYK and VQIINK. A density functional theory study.

Authors:  Joshua A Plumley; J J Dannenberg
Journal:  J Phys Chem B       Date:  2011-08-11       Impact factor: 2.991

8.  Fibrillization propensity for short designed hexapeptides predicted by computer simulation.

Authors:  Victoria A Wagoner; Mookyung Cheon; Iksoo Chang; Carol K Hall
Journal:  J Mol Biol       Date:  2011-12-29       Impact factor: 5.469

9.  Ribonuclease A suggests how proteins self-chaperone against amyloid fiber formation.

Authors:  Poh K Teng; Natalie J Anderson; Lukasz Goldschmidt; Michael R Sawaya; Shilpa Sambashivan; David Eisenberg
Journal:  Protein Sci       Date:  2011-11-23       Impact factor: 6.725

10.  Screening for amyloid proteins in the yeast proteome.

Authors:  Tatyana A Ryzhova; Julia V Sopova; Sergey P Zadorsky; Vera A Siniukova; Aleksandra V Sergeeva; Svetlana A Galkina; Anton A Nizhnikov; Aleksandr A Shenfeld; Kirill V Volkov; Alexey P Galkin
Journal:  Curr Genet       Date:  2017-10-11       Impact factor: 3.886

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