Literature DB >> 19589679

G-quadruplex structures: in vivo evidence and function.

Hans J Lipps1, Daniela Rhodes.   

Abstract

Although many biochemical and structural studies have demonstrated that DNA sequences containing runs of adjacent guanines spontaneously fold into G-quadruplex DNA structures in vitro, only recently has evidence started to accumulate for their presence and function in vivo. Genome-wide analyses have revealed that functional genomic regions from highly divergent organisms are enriched in DNA sequences with G-quadruplex-forming potential, suggesting that G-quadruplexes could provide a nucleic-acid-based mechanism for regulating telomere maintenance, as well as transcription, replication and translation. Here, we review recent studies aimed at uncovering the in vivo presence and function of G-quadruplexes in genomes and RNA, with a particular focus on telomeric G-quadruplexes and how their formation and resolution is regulated to permit telomere synthesis.

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Year:  2009        PMID: 19589679     DOI: 10.1016/j.tcb.2009.05.002

Source DB:  PubMed          Journal:  Trends Cell Biol        ISSN: 0962-8924            Impact factor:   20.808


  256 in total

Review 1.  Beyond DNA origami: the unfolding prospects of nucleic acid nanotechnology.

Authors:  Nicole Michelotti; Alexander Johnson-Buck; Anthony J Manzo; Nils G Walter
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2011-11-30

2.  Unusual salt-induced behaviour of guanine-rich natural DNA evidenced by dynamic light scattering.

Authors:  Massimo Zimbone; Gabriele Bonaventura; Pietro Baeri; Maria Luisa Barcellona
Journal:  Eur Biophys J       Date:  2012-02-19       Impact factor: 1.733

3.  Early and late steps in telomere overhang processing in normal human cells: the position of the final RNA primer drives telomere shortening.

Authors:  Tracy T Chow; Yong Zhao; Sabrina S Mak; Jerry W Shay; Woodring E Wright
Journal:  Genes Dev       Date:  2012-06-01       Impact factor: 11.361

Review 4.  Unravelling the genomic targets of small molecules using high-throughput sequencing.

Authors:  Raphaël Rodriguez; Kyle M Miller
Journal:  Nat Rev Genet       Date:  2014-10-14       Impact factor: 53.242

5.  Effects of site-specific guanine C8-modifications on an intramolecular DNA G-quadruplex.

Authors:  Christopher Jacques Lech; Joefina Kim Cheow Lim; Jocelyn Mei Wen Lim; Samir Amrane; Brahim Heddi; Anh Tuân Phan
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

6.  Guanine repeat-containing sequences confer transcription-dependent instability in an orientation-specific manner in yeast.

Authors:  Nayun Kim; Sue Jinks-Robertson
Journal:  DNA Repair (Amst)       Date:  2011-08-02

Review 7.  G-quadruplexes-novel mediators of gene function.

Authors:  Wenhua Zhou; Nigel J Brand; Liming Ying
Journal:  J Cardiovasc Transl Res       Date:  2011-02-08       Impact factor: 4.132

8.  Quantitative visualization of DNA G-quadruplex structures in human cells.

Authors:  Giulia Biffi; David Tannahill; John McCafferty; Shankar Balasubramanian
Journal:  Nat Chem       Date:  2013-01-20       Impact factor: 24.427

9.  Homologous PNA Hybridization to Noncanonical DNA G-Quadruplexes.

Authors:  Karen A Kormuth; John L Woolford; Bruce A Armitage
Journal:  Biochemistry       Date:  2016-03-16       Impact factor: 3.162

10.  Thermodynamic characterization of human telomere quadruplex unfolding.

Authors:  R Buscaglia; R D Gray; J B Chaires
Journal:  Biopolymers       Date:  2013-12       Impact factor: 2.505

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