Literature DB >> 19581583

Probing the role of the cation-pi interaction in the binding sites of GPCRs using unnatural amino acids.

Michael M Torrice1, Kiowa S Bower, Henry A Lester, Dennis A Dougherty.   

Abstract

We describe a general application of the nonsense suppression methodology for unnatural amino acid incorporation to probe drug-receptor interactions in functional G protein-coupled receptors (GPCRs), evaluating the binding sites of both the M2 muscarinic acetylcholine receptor and the D2 dopamine receptor. Receptors were expressed in Xenopus oocytes, and activation of a G protein-coupled, inward-rectifying K(+) channel (GIRK) provided, after optimization of conditions, a quantitative readout of receptor function. A number of aromatic amino acids thought to be near the agonist-binding site were evaluated. Incorporation of a series of fluorinated tryptophan derivatives at W6.48 of the D2 receptor establishes a cation-pi interaction between the agonist dopamine and W6.48, suggesting a reorientation of W6.48 on agonist binding, consistent with proposed "rotamer switch" models. Interestingly, no comparable cation-pi interaction was found at the aligning residue in the M2 receptor.

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Year:  2009        PMID: 19581583      PMCID: PMC2715518          DOI: 10.1073/pnas.0903260106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

1.  The Cationminus signpi Interaction.

Authors:  Jennifer C. Ma; Dennis A. Dougherty
Journal:  Chem Rev       Date:  1997-08-05       Impact factor: 60.622

2.  In vivo incorporation of unnatural amino acids into ion channels in Xenopus oocyte expression system.

Authors:  M W Nowak; J P Gallivan; S K Silverman; C G Labarca; D A Dougherty; H A Lester
Journal:  Methods Enzymol       Date:  1998       Impact factor: 1.600

3.  Cation-pi interactions in structural biology.

Authors:  J P Gallivan; D A Dougherty
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-17       Impact factor: 11.205

4.  Cation-pi interactions in ligand recognition by serotonergic (5-HT3A) and nicotinic acetylcholine receptors: the anomalous binding properties of nicotine.

Authors:  Darren L Beene; Gabriel S Brandt; Wenge Zhong; Niki M Zacharias; Henry A Lester; Dennis A Dougherty
Journal:  Biochemistry       Date:  2002-08-13       Impact factor: 3.162

5.  Hydrophobic residues of the D2 dopamine receptor are important for binding and signal transduction.

Authors:  W Cho; L P Taylor; A Mansour; H Akil
Journal:  J Neurochem       Date:  1995-11       Impact factor: 5.372

6.  Mapping the Gbetagamma-binding sites in GIRK1 and GIRK2 subunits of the G protein-activated K+ channel.

Authors:  Tatiana Ivanina; Ida Rishal; Dalia Varon; Carmen Mullner; Bibiane Frohnwieser-Steinecke; Wolfgang Schreibmayer; Carmen W Dessauer; Nathan Dascal
Journal:  J Biol Chem       Date:  2003-05-12       Impact factor: 5.157

7.  The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist.

Authors:  Veli-Pekka Jaakola; Mark T Griffith; Michael A Hanson; Vadim Cherezov; Ellen Y T Chien; J Robert Lane; Adriaan P Ijzerman; Raymond C Stevens
Journal:  Science       Date:  2008-10-02       Impact factor: 47.728

8.  Evidence that neuronal G-protein-gated inwardly rectifying K+ channels are activated by G beta gamma subunits and function as heteromultimers.

Authors:  P Kofuji; N Davidson; H A Lester
Journal:  Proc Natl Acad Sci U S A       Date:  1995-07-03       Impact factor: 11.205

9.  From ab initio quantum mechanics to molecular neurobiology: a cation-pi binding site in the nicotinic receptor.

Authors:  W Zhong; J P Gallivan; Y Zhang; L Li; H A Lester; D A Dougherty
Journal:  Proc Natl Acad Sci U S A       Date:  1998-10-13       Impact factor: 11.205

10.  Nicotine binding to brain receptors requires a strong cation-pi interaction.

Authors:  Xinan Xiu; Nyssa L Puskar; Jai A P Shanata; Henry A Lester; Dennis A Dougherty
Journal:  Nature       Date:  2009-03-01       Impact factor: 49.962

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  22 in total

1.  Photochemical proteolysis of an unstructured linker of the GABAAR extracellular domain prevents GABA but not pentobarbital activation.

Authors:  Ariele P Hanek; Henry A Lester; Dennis A Dougherty
Journal:  Mol Pharmacol       Date:  2010-04-02       Impact factor: 4.436

2.  Nicotinic pharmacophore: the pyridine N of nicotine and carbonyl of acetylcholine hydrogen bond across a subunit interface to a backbone NH.

Authors:  Angela P Blum; Henry A Lester; Dennis A Dougherty
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-28       Impact factor: 11.205

3.  Parametrization of halogen bonds in the CHARMM general force field: Improved treatment of ligand-protein interactions.

Authors:  Ignacio Soteras Gutiérrez; Fang-Yu Lin; Kenno Vanommeslaeghe; Justin A Lemkul; Kira A Armacost; Charles L Brooks; Alexander D MacKerell
Journal:  Bioorg Med Chem       Date:  2016-06-18       Impact factor: 3.641

4.  Two neuronal nicotinic acetylcholine receptors, alpha4beta4 and alpha7, show differential agonist binding modes.

Authors:  Nyssa L Puskar; Xinan Xiu; Henry A Lester; Dennis A Dougherty
Journal:  J Biol Chem       Date:  2011-02-22       Impact factor: 5.157

5.  Dynamic structural rearrangements and functional regulation of voltage-sensing phosphatase.

Authors:  Souhei Sakata; Yasushi Okamura
Journal:  J Physiol       Date:  2018-11-22       Impact factor: 5.182

Review 6.  Emerging strategies for expanding the toolbox of enzymes in biocatalysis.

Authors:  Braddock A Sandoval; Todd K Hyster
Journal:  Curr Opin Chem Biol       Date:  2020-01-11       Impact factor: 8.822

7.  Using Cooperatively Folded Peptides To Measure Interaction Energies and Conformational Propensities.

Authors:  Maziar S Ardejani; Evan T Powers; Jeffery W Kelly
Journal:  Acc Chem Res       Date:  2017-07-19       Impact factor: 22.384

8.  Protein-Observed Fluorine NMR Is a Complementary Ligand Discovery Method to 1H CPMG Ligand-Observed NMR.

Authors:  Andrew K Urick; Luis Pablo Calle; Juan F Espinosa; Haitao Hu; William C K Pomerantz
Journal:  ACS Chem Biol       Date:  2016-10-05       Impact factor: 5.100

9.  Unnatural amino acids: better than the real things?

Authors:  Ellen C Minnihan; Kenichi Yokoyama; Joanne Stubbe
Journal:  F1000 Biol Rep       Date:  2009-11-26

Review 10.  In vivo incorporation of non-canonical amino acids by using the chemical aminoacylation strategy: a broadly applicable mechanistic tool.

Authors:  Dennis A Dougherty; Ethan B Van Arnam
Journal:  Chembiochem       Date:  2014-07-02       Impact factor: 3.164

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