Literature DB >> 19580276

15N-1H scalar coupling perturbation: an additional probe for measuring structural changes due to ligand binding.

Junhe Ma1, James M Gruschus, Nico Tjandra.   

Abstract

Chemical shift perturbation mapping of backbone amides is one of the most widely employed techniques in biomolecular NMR, providing residue-by-residue information on interaction interfaces, ligand binding, and chemical modification sites, even for samples where poor solubility, short lifetime, or large size precludes more sophisticated experimental approaches. Significant changes can also occur in the amide one-bond (15)N-(1)H scalar coupling constants for glutamine binding protein (GlnBP) due to ligand binding. Like chemical shift perturbations, large changes (>1 Hz) are seen near the site of glutamine binding, though perturbations also occur distant to the site. The coupling constant perturbations correlate with significant structural changes, especially changes in backbone hydrogen bonding. Thus, amide scalar coupling perturbation can serve as an adjunct to chemical shift perturbation, providing additional information on both short-range and longer-range, allosteric structural changes.

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Year:  2009        PMID: 19580276      PMCID: PMC3513771          DOI: 10.1021/ja903552q

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  17 in total

1.  MOLMOL: a program for display and analysis of macromolecular structures.

Authors:  R Koradi; M Billeter; K Wüthrich
Journal:  J Mol Graph       Date:  1996-02

Review 2.  Measurement of J and dipolar couplings from simplified two-dimensional NMR spectra.

Authors:  M Ottiger; F Delaglio; A Bax
Journal:  J Magn Reson       Date:  1998-04       Impact factor: 2.229

3.  Localizing the NADP+ binding site on the MurB enzyme by NMR.

Authors:  B T Farmer; K L Constantine; V Goldfarb; M S Friedrichs; M Wittekind; J Yanchunas; J G Robertson; L Mueller
Journal:  Nat Struct Biol       Date:  1996-12

4.  Identification by NMR of the binding surface for the histidine-containing phosphocarrier protein HPr on the N-terminal domain of enzyme I of the Escherichia coli phosphotransferase system.

Authors:  D S Garrett; Y J Seok; A Peterkofsky; G M Clore; A M Gronenborn
Journal:  Biochemistry       Date:  1997-04-15       Impact factor: 3.162

5.  The structure of glutamine-binding protein complexed with glutamine at 1.94 A resolution: comparisons with other amino acid binding proteins.

Authors:  Y J Sun; J Rose; B C Wang; C D Hsiao
Journal:  J Mol Biol       Date:  1998-04-24       Impact factor: 5.469

6.  Mapping the binding site for matrix metalloproteinase on the N-terminal domain of the tissue inhibitor of metalloproteinases-2 by NMR chemical shift perturbation.

Authors:  R A Williamson; M D Carr; T A Frenkiel; J Feeney; R B Freedman
Journal:  Biochemistry       Date:  1997-11-11       Impact factor: 3.162

7.  Crystals of glutamine-binding protein in various conformational states.

Authors:  C D Hsiao; Y J Sun; J Rose; P F Cottam; C Ho; B C Wang
Journal:  J Mol Biol       Date:  1994-07-01       Impact factor: 5.469

8.  Direct observation of Calpha-Halpha...O=C hydrogen bonds in proteins by interresidue h3JCalphaC' scalar couplings.

Authors:  Florence Cordier; Michael Barfield; Stephan Grzesiek
Journal:  J Am Chem Soc       Date:  2003-12-24       Impact factor: 15.419

Review 9.  The crystal structure of glutamine-binding protein from Escherichia coli.

Authors:  C D Hsiao; Y J Sun; J Rose; B C Wang
Journal:  J Mol Biol       Date:  1996-09-20       Impact factor: 5.469

10.  Improved accuracy of 15N-1H scalar and residual dipolar couplings from gradient-enhanced IPAP-HSQC experiments on protonated proteins.

Authors:  Lishan Yao; Jinfa Ying; Ad Bax
Journal:  J Biomol NMR       Date:  2009-02-10       Impact factor: 2.835

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  3 in total

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Authors:  Joshua M Ward; Nina M Gorenstein; Jianhua Tian; Stephen F Martin; Carol Beth Post
Journal:  J Am Chem Soc       Date:  2010-08-18       Impact factor: 15.419

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Authors:  Qingxin Li; CongBao Kang
Journal:  Molecules       Date:  2020-06-28       Impact factor: 4.411

3.  Reversible domain closure modulates GlnBP ligand binding affinity.

Authors:  Qun Chen; Fang Li; Xiaobing Zuo; Jin Chen; Peiwu Qin; Chuhui Wang; Jin Xu; Danyu Yang; Baogang Xing; Ying Liu; Peng Jia; Linling Li; Chengming Yang; Dongmei Yu
Journal:  PLoS One       Date:  2022-04-21       Impact factor: 3.240

  3 in total

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