Literature DB >> 19578911

Members of the Dof transcription factor family in Triticum aestivum are associated with light-mediated gene regulation.

Lindsay M Shaw1, C Lynne McIntyre, Peter M Gresshoff, Gang-Ping Xue.   

Abstract

DNA binding with One Finger (Dof) protein is a plant-specific transcription factor implicated in the regulation of many important plant-specific processes, including photosynthesis and carbohydrate metabolism. This study has identified 31 Dof genes (TaDof) in bread wheat through extensive analysis of current nucleotide databases. Phylogenetic analysis suggests that the TaDof family can be divided into four clades. Expression analysis of the TaDof family across all major organs using quantitative RT-PCR and searches of the wheat genome array database revealed that the majority of TaDof members were predominately expressed in vegetative organs. A large number of TaDof members were down-regulated by drought and/or were responsive to the light and dark cycle. Further expression analysis revealed that light up-regulated TaDof members were highly correlated in expression with a number of genes that are involved in photosynthesis or sucrose transport. These data suggest that the TaDof family may have an important role in light-mediated gene regulation, including involvement in the photosynthetic process.

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Year:  2009        PMID: 19578911     DOI: 10.1007/s10142-009-0130-2

Source DB:  PubMed          Journal:  Funct Integr Genomics        ISSN: 1438-793X            Impact factor:   3.410


  53 in total

1.  The DOF transcription factor OBP1 is involved in cell cycle regulation in Arabidopsis thaliana.

Authors:  Aleksandra Skirycz; Amandine Radziejwoski; Wolfgang Busch; Matthew A Hannah; Joanna Czeszejko; Mirosław Kwaśniewski; Maria-Inès Zanor; Jan U Lohmann; Lieven De Veylder; Isabell Witt; Bernd Mueller-Roeber
Journal:  Plant J       Date:  2008-09-04       Impact factor: 6.417

2.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

3.  Wheat Dof transcription factor WPBF interacts with TaQM and activates transcription of an alpha-gliadin gene during wheat seed development.

Authors:  Guoqing Dong; Zhongfu Ni; Yingyin Yao; Xiuling Nie; Qixin Sun
Journal:  Plant Mol Biol       Date:  2006-10-05       Impact factor: 4.076

4.  Involvement of TAAAG elements suggests a role for Dof transcription factors in guard cell-specific gene expression.

Authors:  G Plesch; T Ehrhardt; B Mueller-Roeber
Journal:  Plant J       Date:  2001-11       Impact factor: 6.417

Review 5.  Photoperiodic control of flowering: not only by coincidence.

Authors:  Takato Imaizumi; Steve A Kay
Journal:  Trends Plant Sci       Date:  2006-10-10       Impact factor: 18.313

6.  Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize.

Authors:  S Yanagisawa
Journal:  Plant J       Date:  2000-02       Impact factor: 6.417

7.  A role for the DOF transcription factor BPBF in the regulation of gibberellin-responsive genes in barley aleurone.

Authors:  Montaña Mena; Francisco Javier Cejudo; Ines Isabel-Lamoneda; Pilar Carbonero
Journal:  Plant Physiol       Date:  2002-09       Impact factor: 8.340

8.  Characterization and expression of a new class of zinc finger protein that binds to silencer region of ascorbate oxidase gene.

Authors:  Y Kisu; T Ono; N Shimofurutani; M Suzuki; M Esaka
Journal:  Plant Cell Physiol       Date:  1998-10       Impact factor: 4.927

9.  The Arabidopsis COG1 gene encodes a Dof domain transcription factor and negatively regulates phytochrome signaling.

Authors:  Don Ha Park; Pyung Ok Lim; Jeong Sik Kim; Dae Shik Cho; Sung Hyun Hong; Hong Gil Nam
Journal:  Plant J       Date:  2003-04       Impact factor: 6.417

10.  Molecular dissection of variation in carbohydrate metabolism related to water-soluble carbohydrate accumulation in stems of wheat.

Authors:  Gang-Ping Xue; C Lynne McIntyre; Colin L D Jenkins; Donna Glassop; Anthony F van Herwaarden; Ray Shorter
Journal:  Plant Physiol       Date:  2007-12-14       Impact factor: 8.340

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  39 in total

1.  Quantitative RT-PCR analysis of 20 transcription factor genes of MADS, ARF, HAP2, MBF and HB families in moisture stressed shoot and root tissues of sorghum.

Authors:  S B Aglawe; B Fakrudin; C B Patole; S B Bhairappanavar; R V Koti; P U Krishnaraj
Journal:  Physiol Mol Biol Plants       Date:  2012-10

2.  Genome wide in silico characterization of Dof gene families of pigeonpea (Cajanus cajan (L) Millsp.).

Authors:  N Malviya; S Gupta; V K Singh; M K Yadav; N C Bisht; B K Sarangi; D Yadav
Journal:  Mol Biol Rep       Date:  2014-10-26       Impact factor: 2.316

Review 3.  Insights into structural and functional diversity of Dof (DNA binding with one finger) transcription factor.

Authors:  S Gupta; N Malviya; H Kushwaha; J Nasim; N C Bisht; V K Singh; D Yadav
Journal:  Planta       Date:  2015-01-07       Impact factor: 4.116

4.  Cloning, in silico characterization and prediction of three dimensional structure of SbDof1, SbDof19, SbDof23 and SbDof24 proteins from Sorghum [Sorghum bicolor (L.) Moench].

Authors:  Hariom Kushwaha; Shubhra Gupta; Vinay Kumar Singh; Naveen C Bisht; Bijaya K Sarangi; Dinesh Yadav
Journal:  Mol Biotechnol       Date:  2013-05       Impact factor: 2.695

5.  Genomic Foundation of Starch-to-Lipid Switch in Oleaginous Chlorella spp.

Authors:  Jianhua Fan; Kang Ning; Xiaowei Zeng; Yuanchan Luo; Dongmei Wang; Jianqiang Hu; Jing Li; Hui Xu; Jianke Huang; Minxi Wan; Weiliang Wang; Daojing Zhang; Guomin Shen; Conglin Run; Junjie Liao; Lei Fang; Shi Huang; Xiaoyan Jing; Xiaoquan Su; Anhui Wang; Lili Bai; Zanmin Hu; Jian Xu; Yuanguang Li
Journal:  Plant Physiol       Date:  2015-10-20       Impact factor: 8.340

6.  Identification and molecular characterization of Dof transcription factor gene family preferentially expressed in developing spikes of Eleusine coracana L.

Authors:  Supriya Gupta; Rajesh Kumar Pathak; Sanjay Mohan Gupta; Vikram Singh Gaur; N K Singh; Anil Kumar
Journal:  3 Biotech       Date:  2018-01-16       Impact factor: 2.406

7.  Molecular cloning and expression profiling of multiple Dof genes of Sorghum bicolor (L) Moench.

Authors:  Shubhra Gupta; Gulab C Arya; Neha Malviya; Naveen C Bisht; Dinesh Yadav
Journal:  Mol Biol Rep       Date:  2016-05-26       Impact factor: 2.316

Review 8.  Gene networks in the synthesis and deposition of protein polymers during grain development of wheat.

Authors:  Maoyun She; Xingguo Ye; Yueming Yan; C Howit; M Belgard; Wujun Ma
Journal:  Funct Integr Genomics       Date:  2010-10-20       Impact factor: 3.410

9.  wDBTF: an integrated database resource for studying wheat transcription factor families.

Authors:  Isabelle Romeuf; Dominique Tessier; Mireille Dardevet; Gérard Branlard; Gilles Charmet; Catherine Ravel
Journal:  BMC Genomics       Date:  2010-03-18       Impact factor: 3.969

10.  Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses.

Authors:  Janet A Higgins; Paul C Bailey; David A Laurie
Journal:  PLoS One       Date:  2010-04-19       Impact factor: 3.240

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