Literature DB >> 25564353

Insights into structural and functional diversity of Dof (DNA binding with one finger) transcription factor.

S Gupta1, N Malviya, H Kushwaha, J Nasim, N C Bisht, V K Singh, D Yadav.   

Abstract

MAIN
CONCLUSION: The structural, functional and in-silico studies of Dof transcription factor attempted so far reveals immense opportunity to analyze the plant genomes in terms of number of Dof genes and discuss in light of the evolution. The multiple functions of Dof genes needs to explored for crop improvement. Transcription factors play a very vital role in gene regulation at transcriptional level and are being extensively studied across phylas. In recent years, sequencing of plant genomes has led to genome-wide identification and characterizations of diverse types of plant-specific transcription factor gene family providing key insights into their structural and functional diversity. The DNA binding with one finger (Dof), a class belonging to C2H2-type zinc finger family proteins, is a plant-specific transcription factor having multiple roles such as seed maturation and germination, phytohormone and light-mediated regulation and plant responses to biotic and abiotic stresses. Dof proteins are present across plant lineage, from green algae to higher angiosperm, and represent a unique class of transcription factor having bifunctional binding activities, with both DNA and proteins, to regulate the complex transcriptional machinery in plant cells. The structural and functional diversity of the Dof transcription factor family along with the bioinformatics analysis highlighting the phylogeny of Dof families is reviewed in light of its importance in plant biotechnology for crop improvement.

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Year:  2015        PMID: 25564353     DOI: 10.1007/s00425-014-2239-3

Source DB:  PubMed          Journal:  Planta        ISSN: 0032-0935            Impact factor:   4.116


  90 in total

1.  Functional analyses of the Dof domain, a zinc finger DNA-binding domain, in a pumpkin DNA-binding protein AOBP.

Authors:  N Shimofurutani; Y Kisu; M Suzuki; M Esaka
Journal:  FEBS Lett       Date:  1998-07-03       Impact factor: 4.124

2.  Wheat Dof transcription factor WPBF interacts with TaQM and activates transcription of an alpha-gliadin gene during wheat seed development.

Authors:  Guoqing Dong; Zhongfu Ni; Yingyin Yao; Xiuling Nie; Qixin Sun
Journal:  Plant Mol Biol       Date:  2006-10-05       Impact factor: 4.076

3.  Introduction of the ZmDof1 gene into rice enhances carbon and nitrogen assimilation under low-nitrogen conditions.

Authors:  Tomohiro Kurai; Masataka Wakayama; Tomomi Abiko; Shuichi Yanagisawa; Naohiro Aoki; Ryu Ohsugi
Journal:  Plant Biotechnol J       Date:  2011-05-30       Impact factor: 9.803

4.  Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize.

Authors:  S Yanagisawa
Journal:  Plant J       Date:  2000-02       Impact factor: 6.417

5.  The transcription factor AtDOF4.2 regulates shoot branching and seed coat formation in Arabidopsis.

Authors:  Hong-Feng Zou; Yu-Qin Zhang; Wei Wei; Hao-Wei Chen; Qing-Xin Song; Yun-Feng Liu; Ming-Yu Zhao; Fang Wang; Bao-Cai Zhang; Qing Lin; Wan-Ke Zhang; Biao Ma; Yi-Hua Zhou; Jin-Song Zhang; Shou-Yi Chen
Journal:  Biochem J       Date:  2013-01-15       Impact factor: 3.857

6.  The soybean Dof-type transcription factor genes, GmDof4 and GmDof11, enhance lipid content in the seeds of transgenic Arabidopsis plants.

Authors:  Hui-Wen Wang; Bo Zhang; Yu-Jun Hao; Jian Huang; Ai-Guo Tian; Yong Liao; Jin-Song Zhang; Shou-Yi Chen
Journal:  Plant J       Date:  2007-09-18       Impact factor: 6.417

7.  Target genes for OBP3, a Dof transcription factor, include novel basic helix-loop-helix domain proteins inducible by salicylic acid.

Authors:  Hong-Gu Kang; Rhonda C Foley; Luis Oñate-Sánchez; Chentao Lin; Karam B Singh
Journal:  Plant J       Date:  2003-08       Impact factor: 6.417

8.  Interactions of two transcriptional repressors and two transcriptional activators in modulating gibberellin signaling in aleurone cells.

Authors:  Xiaolu Zou; Dawn Neuman; Qingxi J Shen
Journal:  Plant Physiol       Date:  2008-07-11       Impact factor: 8.340

9.  The Arabidopsis COG1 gene encodes a Dof domain transcription factor and negatively regulates phytochrome signaling.

Authors:  Don Ha Park; Pyung Ok Lim; Jeong Sik Kim; Dae Shik Cho; Sung Hyun Hong; Hong Gil Nam
Journal:  Plant J       Date:  2003-04       Impact factor: 6.417

10.  Sequential activation of two Dof transcription factor gene promoters during vascular development in Arabidopsis thaliana.

Authors:  Mineko Konishi; Shuichi Yanagisawa
Journal:  Plant Physiol Biochem       Date:  2007-05-13       Impact factor: 4.270

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  36 in total

1.  Genome-wide analysis of Phaseolus vulgaris C2C2-YABBY transcription factors under salt stress conditions.

Authors:  Behcet İnal; İlker Büyük; Emre İlhan; Sümer Aras
Journal:  3 Biotech       Date:  2017-09-08       Impact factor: 2.406

2.  Molecular cloning and expression profiling of multiple Dof genes of Sorghum bicolor (L) Moench.

Authors:  Shubhra Gupta; Gulab C Arya; Neha Malviya; Naveen C Bisht; Dinesh Yadav
Journal:  Mol Biol Rep       Date:  2016-05-26       Impact factor: 2.316

3.  Development of Decreased-Gluten Wheat Enabled by Determination of the Genetic Basis of lys3a Barley.

Authors:  Charles P Moehs; William J Austill; Aaron Holm; Tao A G Large; Dayna Loeffler; Jessica Mullenberg; Patrick S Schnable; Wayne Skinner; Jos van Boxtel; Liying Wu; Cate McGuire
Journal:  Plant Physiol       Date:  2019-01-29       Impact factor: 8.340

4.  The auxin-responsive transcription factor SlDOF9 regulates inflorescence and flower development in tomato.

Authors:  Guojian Hu; Keke Wang; Baowen Huang; Isabelle Mila; Pierre Frasse; Elie Maza; Anis Djari; Michel Hernould; Mohamed Zouine; Zhengguo Li; Mondher Bouzayen
Journal:  Nat Plants       Date:  2022-04-14       Impact factor: 15.793

5.  Transcription Factor DOF4.1 Regulates Seed Longevity in Arabidopsis via Seed Permeability and Modulation of Seed Storage Protein Accumulation.

Authors:  Regina Niñoles; Carmen Maria Ruiz-Pastor; Paloma Arjona-Mudarra; Jose Casañ; Joan Renard; Eduardo Bueso; Ruben Mateos; Ramón Serrano; Jose Gadea
Journal:  Front Plant Sci       Date:  2022-07-01       Impact factor: 6.627

6.  ThDof1.4 and ThZFP1 constitute a transcriptional regulatory cascade involved in salt or osmotic stress in Tamarix hispida.

Authors:  Dandan Zang; Lina Wang; Yiming Zhang; Huimin Zhao; Yucheng Wang
Journal:  Plant Mol Biol       Date:  2017-06-03       Impact factor: 4.076

7.  Genome-Wide Analysis and Expression Profiles of the Dof Family in Cleistogenes songorica under Temperature, Salt and ABA Treatment.

Authors:  Penglei Wang; Zhuanzhuan Yan; Xifang Zong; Qi Yan; Jiyu Zhang
Journal:  Plants (Basel)       Date:  2021-04-23

8.  Transcriptome analysis of gynoecium morphogenesis uncovers the chronology of gene regulatory network activity.

Authors:  Kimmo I Kivivirta; Denise Herbert; Clemens Roessner; Stefan de Folter; Nayelli Marsch-Martinez; Annette Becker
Journal:  Plant Physiol       Date:  2021-04-02       Impact factor: 8.340

9.  Whole plant acclimation responses by finger millet to low nitrogen stress.

Authors:  Travis L Goron; Vijay K Bhosekar; Charles R Shearer; Sophia Watts; Manish N Raizada
Journal:  Front Plant Sci       Date:  2015-08-19       Impact factor: 5.753

10.  Genome-Wide Identification and Expression Profile of Dof Transcription Factor Gene Family in Pepper (Capsicum annuum L.).

Authors:  Zhiming Wu; Jiaowen Cheng; Junjie Cui; Xiaowan Xu; Guansheng Liang; Xirong Luo; Xiaocui Chen; Xiangqun Tang; Kailin Hu; Cheng Qin
Journal:  Front Plant Sci       Date:  2016-04-29       Impact factor: 5.753

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