Literature DB >> 19578483

EMPLOYING TOPOGRAPHICAL HEIGHT MAP IN COLONIC POLYP MEASUREMENT AND FALSE POSITIVE REDUCTION.

Jianhua Yao1, Jiang Li, Ronald M Summers.   

Abstract

CT Colonography (CTC) is an emerging minimally invasive technique for screening and diagnosing colon cancers. Computer Aided Detection (CAD) techniques can increase sensitivity and reduce false positives. Inspired by the way radiologists detect polyps via 3D virtual fly-through in CTC, we borrowed the idea from geographic information systems to employ topographical height map in colonic polyp measurement and false positive reduction. After a curvature based filtering and a 3D CT feature classifier, a height map is computed for each detection using a ray-casting algorithm. We design a concentric index to characterize the concentric pattern in polyp height map based on the fact that polyps are protrusions from the colon wall and round in shape. The height map is optimized through a multi-scale spiral spherical search to maximize the concentric index. We derive several topographic features from the map and compute texture features based on wavelet decomposition. We then send the features to a committee of support vector machines for classification. We have trained our method on 394 patients (71 polyps) and tested it on 792 patients (226 polyps). Results showed that we can achieve 95% sensitivity at 2.4 false positives per patient and the height map features can reduce false positives by more than 50%. We compute the polyp height and width measurements and correlate them with manual measurements. The Pearson correlations are 0.74 (p=0.11) and 0.75 (p=0.17) for height and width, respectively.

Entities:  

Year:  2009        PMID: 19578483      PMCID: PMC2659680          DOI: 10.1016/j.patcog.2008.09.034

Source DB:  PubMed          Journal:  Pattern Recognit        ISSN: 0031-3203            Impact factor:   7.740


  25 in total

1.  A statistical 3-D pattern processing method for computer-aided detection of polyps in CT colonography.

Authors:  S B Göktürk; C Tomasi; B Acar; C F Beaulieu; D S Paik; R B Jeffrey; J Yee; S Napel
Journal:  IEEE Trans Med Imaging       Date:  2001-12       Impact factor: 10.048

2.  Computed tomographic virtual colonoscopy to screen for colorectal neoplasia in asymptomatic adults.

Authors:  Perry J Pickhardt; J Richard Choi; Inku Hwang; James A Butler; Michael L Puckett; Hans A Hildebrandt; Roy K Wong; Pamela A Nugent; Pauline A Mysliwiec; William R Schindler
Journal:  N Engl J Med       Date:  2003-12-01       Impact factor: 91.245

Review 3.  Electronic cleansing and stool tagging in CT colonography: advantages and pitfalls with primary three-dimensional evaluation.

Authors:  Perry J Pickhardt; Jong-Ho Richard Choi
Journal:  AJR Am J Roentgenol       Date:  2003-09       Impact factor: 3.959

4.  Linear polyp measurement at CT colonography: in vitro and in vivo comparison of two-dimensional and three-dimensional displays.

Authors:  Perry J Pickhardt; Andrew D Lee; Elizabeth G McFarland; Andrew J Taylor
Journal:  Radiology       Date:  2005-09       Impact factor: 11.105

5.  Polyps: linear and volumetric measurement at CT colonography.

Authors:  Srinath C Yeshwant; Ronald M Summers; Jianhua Yao; Daniel S Brickman; J Richard Choi; Perry J Pickhardt
Journal:  Radiology       Date:  2006-12       Impact factor: 11.105

Review 6.  CT colonography reporting and data system: a consensus proposal.

Authors:  Michael E Zalis; Matthew A Barish; J Richard Choi; Abraham H Dachman; Helen M Fenlon; Joseph T Ferrucci; Seth N Glick; Andrea Laghi; Michael Macari; Elizabeth G McFarland; Martina M Morrin; Perry J Pickhardt; Jorge Soto; Judy Yee
Journal:  Radiology       Date:  2005-07       Impact factor: 11.105

7.  Computed tomographic virtual colonoscopy computer-aided polyp detection in a screening population.

Authors:  Ronald M Summers; Jianhua Yao; Perry J Pickhardt; Marek Franaszek; Ingmar Bitter; Daniel Brickman; Vamsi Krishna; J Richard Choi
Journal:  Gastroenterology       Date:  2005-12       Impact factor: 22.682

8.  Statistical methods for assessing agreement between two methods of clinical measurement.

Authors:  J M Bland; D G Altman
Journal:  Lancet       Date:  1986-02-08       Impact factor: 79.321

9.  Cancer statistics, 2005.

Authors:  Ahmedin Jemal; Taylor Murray; Elizabeth Ward; Alicia Samuels; Ram C Tiwari; Asma Ghafoor; Eric J Feuer; Michael J Thun
Journal:  CA Cancer J Clin       Date:  2005 Jan-Feb       Impact factor: 508.702

10.  Conspicuity of colorectal polyps at CT colonography: visual assessment, CAD performance, and the important role of polyp height.

Authors:  Ronald M Summers; Suzanne M Frentz; Jiamin Liu; Jianhua Yao; Linda Brown; Adeline Louie; Duncan S Barlow; Donald W Jensen; Andrew J Dwyer; Perry J Pickhardt; Nicholas Petrick
Journal:  Acad Radiol       Date:  2009-01       Impact factor: 3.173

View more
  10 in total

1.  Automated measurement of colorectal polyp height at CT colonography: hyperplastic polyps are flatter than adenomatous polyps.

Authors:  Ronald M Summers; Jiamin Liu; Jianhua Yao; Linda Brown; J Richard Choi; Perry J Pickhardt
Journal:  AJR Am J Roentgenol       Date:  2009-11       Impact factor: 3.959

2.  Machine Learning in Computer-aided Diagnosis of the Thorax and Colon in CT: A Survey.

Authors:  Kenji Suzuki
Journal:  IEICE Trans Inf Syst       Date:  2013-04-01

3.  Increasing computer-aided detection specificity by projection features for CT colonography.

Authors:  Hongbin Zhu; Zhengrong Liang; Perry J Pickhardt; Matthew A Barish; Jiangsheng You; Yi Fan; Hongbing Lu; Erica J Posniak; Robert J Richards; Harris L Cohen
Journal:  Med Phys       Date:  2010-04       Impact factor: 4.071

4.  Massive-training support vector regression and Gaussian process for false-positive reduction in computer-aided detection of polyps in CT colonography.

Authors:  Jian-Wu Xu; Kenji Suzuki
Journal:  Med Phys       Date:  2011-04       Impact factor: 4.071

5.  A CAD of fully automated colonic polyp detection for contrasted and non-contrasted CT scans.

Authors:  Gökalp Tulum; Bülent Bolat; Onur Osman
Journal:  Int J Comput Assist Radiol Surg       Date:  2017-01-18       Impact factor: 2.924

Review 6.  Machine learning and radiology.

Authors:  Shijun Wang; Ronald M Summers
Journal:  Med Image Anal       Date:  2012-02-23       Impact factor: 8.545

7.  A review of computer-aided diagnosis in thoracic and colonic imaging.

Authors:  Kenji Suzuki
Journal:  Quant Imaging Med Surg       Date:  2012-09

8.  Improving Computer-Aided Detection Using Convolutional Neural Networks and Random View Aggregation.

Authors:  Holger R Roth; Le Lu; Jiamin Liu; Jianhua Yao; Ari Seff; Kevin Cherry; Lauren Kim; Ronald M Summers
Journal:  IEEE Trans Med Imaging       Date:  2015-09-28       Impact factor: 10.048

9.  An adaptive paradigm for computer-aided detection of colonic polyps.

Authors:  Huafeng Wang; Zhengrong Liang; Lihong C Li; Hao Han; Bowen Song; Perry J Pickhardt; Matthew A Barish; Chris E Lascarides
Journal:  Phys Med Biol       Date:  2015-09-08       Impact factor: 3.609

10.  Pixel-based machine learning in medical imaging.

Authors:  Kenji Suzuki
Journal:  Int J Biomed Imaging       Date:  2012-02-28
  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.