Literature DB >> 19564845

Limitations and possibilities of small RNA digital gene expression profiling.

Sam E V Linsen, Elzo de Wit, Georges Janssens, Sheila Heater, Laura Chapman, Rachael K Parkin, Brian Fritz, Stacia K Wyman, Ewart de Bruijn, Emile E Voest, Scott Kuersten, Muneesh Tewari, Edwin Cuppen.   

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Year:  2009        PMID： 19564845     DOI： 10.1038/nmeth0709-474

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  8 in total

1.  Diversity of microRNAs in human and chimpanzee brain.

Authors:  Eugene Berezikov; Fritz Thuemmler; Linda W van Laake; Ivanela Kondova; Ronald Bontrop; Edwin Cuppen; Ronald H A Plasterk
Journal:  Nat Genet       Date:  2006-10-29       Impact factor: 38.330

2.  Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans.

Authors:  J Graham Ruby; Calvin Jan; Christopher Player; Michael J Axtell; William Lee; Chad Nusbaum; Hui Ge; David P Bartel
Journal:  Cell       Date:  2006-12-15       Impact factor: 41.582

3.  The effect of acceptor oligoribonucleotide sequence on the T4 RNA ligase reaction.

Authors:  E Romaniuk; L W McLaughlin; T Neilson; P J Romaniuk
Journal:  Eur J Biochem       Date:  1982-07

4.  Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis.

Authors:  Eugene Berezikov; Geert van Tetering; Mark Verheul; Jose van de Belt; Linda van Laake; Joost Vos; Robert Verloop; Marc van de Wetering; Victor Guryev; Shuji Takada; Anton Jan van Zonneveld; Hiroyuki Mano; Ronald Plasterk; Edwin Cuppen
Journal:  Genome Res       Date:  2006-09-05       Impact factor: 9.043

5.  Reverse transcriptase of mouse mammary tumour virus: expression in bacteria, purification and biochemical characterization.

Authors:  R Taube; S Loya; O Avidan; M Perach; A Hizi
Journal:  Biochem J       Date:  1998-02-01       Impact factor: 3.857

6.  An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans.

Authors:  N C Lau; L P Lim; E G Weinstein; D P Bartel
Journal:  Science       Date:  2001-10-26       Impact factor: 47.728

7.  In-depth characterization of the microRNA transcriptome in a leukemia progression model.

Authors:  Florian Kuchenbauer; Ryan D Morin; Bob Argiropoulos; Oleh I Petriv; Malachi Griffith; Michael Heuser; Eric Yung; Jessica Piper; Allen Delaney; Anna-Liisa Prabhu; Yongjun Zhao; Helen McDonald; Thomas Zeng; Martin Hirst; Carl L Hansen; Marco A Marra; R Keith Humphries
Journal:  Genome Res       Date:  2008-10-10       Impact factor: 9.043

8.  miRBase: microRNA sequences, targets and gene nomenclature.

Authors:  Sam Griffiths-Jones; Russell J Grocock; Stijn van Dongen; Alex Bateman; Anton J Enright
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971
  8 in total
  152 in total

1.  A bias-reducing strategy in profiling small RNAs using Solexa.

Authors:  Guihua Sun; Xiwei Wu; Jinhui Wang; Haiqing Li; Xuejun Li; Hanlin Gao; John Rossi; Yun Yen
Journal:  RNA       Date:  2011-10-20       Impact factor: 4.942

2.  Transcriptome-wide analysis of small RNA expression in early zebrafish development.

Authors:  Chunyao Wei; Leonidas Salichos; Carli M Wittgrove; Antonis Rokas; James G Patton
Journal:  RNA       Date:  2012-03-08       Impact factor: 4.942

3.  High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis.

Authors:  Natalie W Breakfield; David L Corcoran; Jalean J Petricka; Jeffrey Shen; Juthamas Sae-Seaw; Ignacio Rubio-Somoza; Detlef Weigel; Uwe Ohler; Philip N Benfey
Journal:  Genome Res       Date:  2011-09-22       Impact factor: 9.043

4.  MicroRNA profiling: separating signal from noise.

Authors:  Monya Baker
Journal:  Nat Methods       Date:  2010-09       Impact factor: 28.547

5.  Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression.

Authors:  Anna Git; Heidi Dvinge; Mali Salmon-Divon; Michelle Osborne; Claudia Kutter; James Hadfield; Paul Bertone; Carlos Caldas
Journal:  RNA       Date:  2010-04-01       Impact factor: 4.942

Review 6.  RNA sequencing: advances, challenges and opportunities.

Authors:  Fatih Ozsolak; Patrice M Milos
Journal:  Nat Rev Genet       Date:  2010-12-30       Impact factor: 53.242

7.  miR-ID: a novel, circularization-based platform for detection of microRNAs.

Authors:  Pavan Kumar; Brian H Johnston; Sergei A Kazakov
Journal:  RNA       Date:  2010-12-17       Impact factor: 4.942

8.  Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing.

Authors:  Florian Caiment; Carole Charlier; Tracy Hadfield; Noelle Cockett; Michel Georges; Denis Baurain
Journal:  Genome Res       Date:  2010-10-13       Impact factor: 9.043

9.  Optimization of enzymatic reaction conditions for generating representative pools of cDNA from small RNA.

Authors:  Daniela B Munafó; G Brett Robb
Journal:  RNA       Date:  2010-10-04       Impact factor: 4.942

10.  Highly efficient ligation of small RNA molecules for microRNA quantitation by high-throughput sequencing.

Authors:  Jerome E Lee; Rui Yi
Journal:  J Vis Exp       Date:  2014-11-18       Impact factor: 1.355
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