Literature DB >> 19560550

Towards a genome-wide reconstruction of cis-regulatory networks in the human genome.

Katharine R Cecchini1, A Raja Banerjee, Tae Hoon Kim.   

Abstract

The vast amount of recent progress made on the sequence of the human genome has allowed an unprecedented examination of cis-regulatory networks. These networks consist of functional elements such as promoters, enhancers, silencers, and insulators, and their coordinated activity is responsible for regulation of gene expression. Recent studies surveyed the entire genome, identifying novel elements and evaluating functional differences in respect to development. These investigations present the first steps towards a global regulatory map for expression in the human genome.

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Year:  2009        PMID: 19560550      PMCID: PMC2796432          DOI: 10.1016/j.semcdb.2009.06.005

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN: 1084-9521            Impact factor:   7.727


  78 in total

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Authors:  Julie A Wallace; Gary Felsenfeld
Journal:  Curr Opin Genet Dev       Date:  2007-10-24       Impact factor: 5.578

Review 2.  Beta-globin regulation and long-range interactions.

Authors:  Robert-Jan Palstra; Wouter de Laat; Frank Grosveld
Journal:  Adv Genet       Date:  2008       Impact factor: 1.944

3.  A mechanism for Ikaros regulation of human globin gene switching.

Authors:  Janelle R Keys; Michael R Tallack; Ye Zhan; Peter Papathanasiou; Christopher C Goodnow; Karin M Gaensler; Merlin Crossley; Job Dekker; Andrew C Perkins
Journal:  Br J Haematol       Date:  2008-03-03       Impact factor: 6.998

4.  Transcriptional repression mediated by repositioning of genes to the nuclear lamina.

Authors:  K L Reddy; J M Zullo; E Bertolino; H Singh
Journal:  Nature       Date:  2008-02-13       Impact factor: 49.962

5.  High-resolution mapping and characterization of open chromatin across the genome.

Authors:  Alan P Boyle; Sean Davis; Hennady P Shulha; Paul Meltzer; Elliott H Margulies; Zhiping Weng; Terrence S Furey; Gregory E Crawford
Journal:  Cell       Date:  2008-01-25       Impact factor: 41.582

6.  A polycomb repression signature in metastatic prostate cancer predicts cancer outcome.

Authors:  Jindan Yu; Jianjun Yu; Daniel R Rhodes; Scott A Tomlins; Xuhong Cao; Guoan Chen; Rohit Mehra; Xiaoju Wang; Debashis Ghosh; Rajal B Shah; Sooryanarayana Varambally; Kenneth J Pienta; Arul M Chinnaiyan
Journal:  Cancer Res       Date:  2007-11-15       Impact factor: 12.701

7.  Cohesin mediates transcriptional insulation by CCCTC-binding factor.

Authors:  Kerstin S Wendt; Keisuke Yoshida; Takehiko Itoh; Masashige Bando; Birgit Koch; Erika Schirghuber; Shuichi Tsutsumi; Genta Nagae; Ko Ishihara; Tsuyoshi Mishiro; Kazuhide Yahata; Fumio Imamoto; Hiroyuki Aburatani; Mitsuyoshi Nakao; Naoko Imamoto; Kazuhiro Maeshima; Katsuhiko Shirahige; Jan-Michael Peters
Journal:  Nature       Date:  2008-01-30       Impact factor: 49.962

8.  A genetic locus targeted to the nuclear periphery in living cells maintains its transcriptional competence.

Authors:  R Ileng Kumaran; David L Spector
Journal:  J Cell Biol       Date:  2008-01-14       Impact factor: 10.539

9.  Recruitment to the nuclear periphery can alter expression of genes in human cells.

Authors:  Lee E Finlan; Duncan Sproul; Inga Thomson; Shelagh Boyle; Elizabeth Kerr; Paul Perry; Bauke Ylstra; Jonathan R Chubb; Wendy A Bickmore
Journal:  PLoS Genet       Date:  2008-03-21       Impact factor: 5.917

10.  Coordinate gene regulation during hematopoiesis is related to genomic organization.

Authors:  Steven T Kosak; David Scalzo; Sam V Alworth; Fusheng Li; Stephanie Palmer; Tariq Enver; James S J Lee; Mark Groudine
Journal:  PLoS Biol       Date:  2007-11       Impact factor: 8.029

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  4 in total

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Authors:  Aurélien A Sérandour; Stéphane Avner; Frédéric Percevault; Florence Demay; Maud Bizot; Céline Lucchetti-Miganeh; Frédérique Barloy-Hubler; Myles Brown; Mathieu Lupien; Raphaël Métivier; Gilles Salbert; Jérôme Eeckhoute
Journal:  Genome Res       Date:  2011-01-13       Impact factor: 9.043

Review 2.  cis-regulatory mutations are a genetic cause of human limb malformations.

Authors:  Julia E VanderMeer; Nadav Ahituv
Journal:  Dev Dyn       Date:  2011-01-11       Impact factor: 3.780

3.  Moving on from GWAS: functional studies on the G6PC2 gene implicated in the regulation of fasting blood glucose.

Authors:  Richard M O'Brien
Journal:  Curr Diab Rep       Date:  2013-12       Impact factor: 4.810

4.  Partially observed bipartite network analysis to identify predictive connections in transcriptional regulatory networks.

Authors:  Angel Alvarez; Peter J Woolf
Journal:  BMC Syst Biol       Date:  2011-05-27
  4 in total

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