Literature DB >> 19559648

Gene copy number and malaria biology.

Tim J C Anderson1, Jigar Patel, Michael T Ferdig.   

Abstract

Alteration in gene copy number provides a simple way to change expression levels and alter phenotype. This was fully appreciated by bacteriologists more than 25 years ago, but the extent and implications of copy number polymorphism (CNP) have only recently become apparent in other organisms. New methods demonstrate the ubiquity of CNPs in eukaryotes and their medical importance in humans. CNP is also widespread in the Plasmodium falciparum genome and has an important and underappreciated role in determining phenotype. In this review, we summarize the distribution of CNP, its evolutionary dynamics within populations, its functional importance and its mode of evolution.

Entities:  

Mesh:

Year:  2009        PMID: 19559648      PMCID: PMC2839409          DOI: 10.1016/j.pt.2009.04.005

Source DB:  PubMed          Journal:  Trends Parasitol        ISSN: 1471-4922


  63 in total

1.  Geographical distribution of selected and putatively neutral SNPs in Southeast Asian malaria parasites.

Authors:  Tim J C Anderson; Shalini Nair; Dan Sudimack; Jeff T Williams; Mayfong Mayxay; Paul N Newton; Jean-Paul Guthmann; Frank M Smithuis; Tinh Hien Tran; Ingrid V F van den Broek; Nicholas J White; François Nosten
Journal:  Mol Biol Evol       Date:  2005-08-10       Impact factor: 16.240

2.  Reticulocyte-binding protein homologue 1 is required for sialic acid-dependent invasion into human erythrocytes by Plasmodium falciparum.

Authors:  Tony Triglia; Manoj T Duraisingh; Robert T Good; Alan F Cowman
Journal:  Mol Microbiol       Date:  2005-01       Impact factor: 3.501

Review 3.  Rates of spontaneous mutation.

Authors:  J W Drake; B Charlesworth; D Charlesworth; J F Crow
Journal:  Genetics       Date:  1998-04       Impact factor: 4.562

4.  pfmdr1 mutations contribute to quinine resistance and enhance mefloquine and artemisinin sensitivity in Plasmodium falciparum.

Authors:  Amar Bir Singh Sidhu; Stephanie Gaw Valderramos; David A Fidock
Journal:  Mol Microbiol       Date:  2005-08       Impact factor: 3.501

5.  Microarray-based comparative genomic analyses of the human malaria parasite Plasmodium falciparum using Affymetrix arrays.

Authors:  Céline Karine Carret; Paul Horrocks; Bernard Konfortov; Elizabeth Winzeler; Matloob Qureshi; Chris Newbold; Alasdair Ivens
Journal:  Mol Biochem Parasitol       Date:  2005-09-08       Impact factor: 1.759

6.  Plasmodium falciparum: parasites defective in early stages of gametocytogenesis.

Authors:  P Alano; L Roca; D Smith; D Read; R Carter; K Day
Journal:  Exp Parasitol       Date:  1995-09       Impact factor: 2.011

7.  Implication of a Plasmodium falciparum gene in the switch between asexual reproduction and gametocytogenesis.

Authors:  Donald L Gardiner; Matthew W A Dixon; Tobias Spielmann; Tina S Skinner-Adams; Paula L Hawthorne; Maria R Ortega; David J Kemp; Katharine R Trenholme
Journal:  Mol Biochem Parasitol       Date:  2005-01-19       Impact factor: 1.759

8.  A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses.

Authors:  Neil Hall; Marianna Karras; J Dale Raine; Jane M Carlton; Taco W A Kooij; Matthew Berriman; Laurence Florens; Christoph S Janssen; Arnab Pain; Georges K Christophides; Keith James; Kim Rutherford; Barbara Harris; David Harris; Carol Churcher; Michael A Quail; Doug Ormond; Jon Doggett; Holly E Trueman; Jacqui Mendoza; Shelby L Bidwell; Marie-Adele Rajandream; Daniel J Carucci; John R Yates; Fotis C Kafatos; Chris J Janse; Bart Barrell; C Michael R Turner; Andrew P Waters; Robert E Sinden
Journal:  Science       Date:  2005-01-07       Impact factor: 47.728

9.  The influence of CCL3L1 gene-containing segmental duplications on HIV-1/AIDS susceptibility.

Authors:  Enrique Gonzalez; Hemant Kulkarni; Hector Bolivar; Andrea Mangano; Racquel Sanchez; Gabriel Catano; Robert J Nibbs; Barry I Freedman; Marlon P Quinones; Michael J Bamshad; Krishna K Murthy; Brad H Rovin; William Bradley; Robert A Clark; Stephanie A Anderson; Robert J O'connell; Brian K Agan; Seema S Ahuja; Rosa Bologna; Luisa Sen; Matthew J Dolan; Sunil K Ahuja
Journal:  Science       Date:  2005-01-06       Impact factor: 47.728

10.  High-efficiency transformation of Plasmodium falciparum by the lepidopteran transposable element piggyBac.

Authors:  Bharath Balu; Douglas A Shoue; Malcolm J Fraser; John H Adams
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-31       Impact factor: 11.205

View more
  20 in total

1.  Complex DNA structures trigger copy number variation across the Plasmodium falciparum genome.

Authors:  Adam C Huckaby; Claire S Granum; Maureen A Carey; Karol Szlachta; Basel Al-Barghouthi; Yuh-Hwa Wang; Jennifer L Guler
Journal:  Nucleic Acids Res       Date:  2019-02-28       Impact factor: 16.971

2.  Genetic changes during laboratory propagation: copy number At the reticulocyte-binding protein 1 locus of Plasmodium falciparum.

Authors:  Shalini Nair; Standwell Nkhoma; François Nosten; Mayfong Mayxay; Neil French; Jim Whitworth; Tim Anderson
Journal:  Mol Biochem Parasitol       Date:  2010-04-02       Impact factor: 1.759

3.  Deamplification of pfmdr1-containing amplicon on chromosome 5 in Plasmodium falciparum is associated with reduced resistance to artelinic acid in vitro.

Authors:  Nanhua Chen; Marina Chavchich; Jennifer M Peters; Dennis E Kyle; Michelle L Gatton; Qin Cheng
Journal:  Antimicrob Agents Chemother       Date:  2010-04-26       Impact factor: 5.191

Review 4.  The molecular basis of antifolate resistance in Plasmodium falciparum: looking beyond point mutations.

Authors:  Adina Heinberg; Laura Kirkman
Journal:  Ann N Y Acad Sci       Date:  2015-02-18       Impact factor: 5.691

5.  Direct evidence for the adaptive role of copy number variation on antifolate susceptibility in Plasmodium falciparum.

Authors:  Adina Heinberg; Edwin Siu; Chaya Stern; Elizabeth A Lawrence; Michael T Ferdig; Kirk W Deitsch; Laura A Kirkman
Journal:  Mol Microbiol       Date:  2013-04-24       Impact factor: 3.501

Review 6.  Outwitting evolution: fighting drug-resistant TB, malaria, and HIV.

Authors:  Daniel E Goldberg; Robert F Siliciano; William R Jacobs
Journal:  Cell       Date:  2012-03-16       Impact factor: 41.582

7.  Recent Progress in Functional Genomic Research in Plasmodium falciparum.

Authors:  Jianbing Mu; Karl B Seydel; Adam Bates; Xin-Zhuan Su
Journal:  Curr Genomics       Date:  2010-06       Impact factor: 2.236

8.  Identification and functional validation of the novel antimalarial resistance locus PF10_0355 in Plasmodium falciparum.

Authors:  Daria Van Tyne; Daniel J Park; Stephen F Schaffner; Daniel E Neafsey; Elaine Angelino; Joseph F Cortese; Kayla G Barnes; David M Rosen; Amanda K Lukens; Rachel F Daniels; Danny A Milner; Charles A Johnson; Ilya Shlyakhter; Sharon R Grossman; Justin S Becker; Daniel Yamins; Elinor K Karlsson; Daouda Ndiaye; Ousmane Sarr; Souleymane Mboup; Christian Happi; Nicholas A Furlotte; Eleazar Eskin; Hyun Min Kang; Daniel L Hartl; Bruce W Birren; Roger C Wiegand; Eric S Lander; Dyann F Wirth; Sarah K Volkman; Pardis C Sabeti
Journal:  PLoS Genet       Date:  2011-04-21       Impact factor: 5.917

9.  The landscape of inherited and de novo copy number variants in a Plasmodium falciparum genetic cross.

Authors:  Upeka Samarakoon; Joseph M Gonzales; Jigar J Patel; Asako Tan; Lisa Checkley; Michael T Ferdig
Journal:  BMC Genomics       Date:  2011-09-22       Impact factor: 3.969

10.  Asexual populations of the human malaria parasite, Plasmodium falciparum, use a two-step genomic strategy to acquire accurate, beneficial DNA amplifications.

Authors:  Jennifer L Guler; Daniel L Freeman; Vida Ahyong; Rapatbhorn Patrapuvich; John White; Ramesh Gujjar; Margaret A Phillips; Joseph DeRisi; Pradipsinh K Rathod
Journal:  PLoS Pathog       Date:  2013-05-23       Impact factor: 6.823

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.