Literature DB >> 19548346

Promises and pitfalls of quantitative structure-activity relationship approaches for predicting metabolism and toxicity.

Elton Zvinavashe1, Albertinka J Murk, Ivonne M C M Rietjens.   

Abstract

The description of quantitative structure-activity relationship (QSAR) models has been a topic for scientific research for more than 40 years and a topic within the regulatory framework for more than 20 years. At present, efforts on QSAR development are increasing because of their promise for supporting reduction, refinement, and/or replacement of animal toxicity experiments. However, their acceptance in risk assessment seems to require a more standardized and scientific underpinning of QSAR technology to avoid possible pitfalls. For this reason, guidelines for QSAR model development recently proposed by the Organization for Economic Cooperation and Development (OECD) [Organization for Economic Cooperation and Development (OECD) (2007) Guidance document on the validation of (quantitative) structure-activity relationships [(Q)SAR] models. OECD Environment Health and Safety Publications: Series on Testing and Assessment No. 69, Paris] are expected to help increase the acceptability of QSAR models for regulatory purposes. The guidelines recommend that QSAR models should be associated with (i) a defined end point, (ii) an unambiguous algorithm, (iii) a defined domain of applicability, (iv) appropriate measures of goodness-of-fit, robustness, and predictivity, and (v) a mechanistic interpretation, if possible [Organization for Economic Cooperation and Development (OECD) (2007) Guidance document on the validation of (quantitative) structure-activity relationships [(Q)SAR] models. The present perspective provides an overview of these guidelines for QSAR model development and their rationale, as well as the promises and pitfalls of using QSAR approaches and these guidelines for predicting metabolism and toxicity of new and existing chemicals.

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Year:  2008        PMID: 19548346     DOI: 10.1021/tx800252e

Source DB:  PubMed          Journal:  Chem Res Toxicol        ISSN: 0893-228X            Impact factor:   3.739


  13 in total

1.  Application of preparative capillary gas chromatography (pcGC), automated structure generation and mutagenicity prediction to improve effect-directed analysis of genotoxicants in a contaminated groundwater.

Authors:  Cornelia Meinert; Emma Schymanski; Eberhard Küster; Ralph Kühne; Gerrit Schüürmann; Werner Brack
Journal:  Environ Sci Pollut Res Int       Date:  2010-01-30       Impact factor: 4.223

2.  Trust, but verify: on the importance of chemical structure curation in cheminformatics and QSAR modeling research.

Authors:  Denis Fourches; Eugene Muratov; Alexander Tropsha
Journal:  J Chem Inf Model       Date:  2010-07-26       Impact factor: 4.956

3.  Hybrid-genetic algorithm based descriptor optimization and QSAR models for predicting the biological activity of Tipranavir analogs for HIV protease inhibition.

Authors:  A Srinivas Reddy; Sunil Kumar; Rajni Garg
Journal:  J Mol Graph Model       Date:  2010-03-24       Impact factor: 2.518

4.  Modeling liver-related adverse effects of drugs using knearest neighbor quantitative structure-activity relationship method.

Authors:  Amie D Rodgers; Hao Zhu; Denis Fourches; Ivan Rusyn; Alexander Tropsha
Journal:  Chem Res Toxicol       Date:  2010-04-19       Impact factor: 3.739

5.  Mechanism-driven modeling of chemical hepatotoxicity using structural alerts and an in vitro screening assay.

Authors:  Xuelian Jia; Xia Wen; Daniel P Russo; Lauren M Aleksunes; Hao Zhu
Journal:  J Hazard Mater       Date:  2022-05-20       Impact factor: 14.224

Review 6.  Integrative approaches for predicting in vivo effects of chemicals from their structural descriptors and the results of short-term biological assays.

Authors:  Yen Sia Low; Alexander Yeugenyevich Sedykh; Ivan Rusyn; Alexander Tropsha
Journal:  Curr Top Med Chem       Date:  2014       Impact factor: 3.295

Review 7.  Computational prediction of metabolism: sites, products, SAR, P450 enzyme dynamics, and mechanisms.

Authors:  Johannes Kirchmair; Mark J Williamson; Jonathan D Tyzack; Lu Tan; Peter J Bond; Andreas Bender; Robert C Glen
Journal:  J Chem Inf Model       Date:  2012-02-17       Impact factor: 4.956

Review 8.  On exploring structure-activity relationships.

Authors:  Rajarshi Guha
Journal:  Methods Mol Biol       Date:  2013

Review 9.  From QSAR to QSIIR: searching for enhanced computational toxicology models.

Authors:  Hao Zhu
Journal:  Methods Mol Biol       Date:  2013

10.  Integrative chemical-biological read-across approach for chemical hazard classification.

Authors:  Yen Low; Alexander Sedykh; Denis Fourches; Alexander Golbraikh; Maurice Whelan; Ivan Rusyn; Alexander Tropsha
Journal:  Chem Res Toxicol       Date:  2013-08-05       Impact factor: 3.739

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