Literature DB >> 19544026

Electrospray mass spectrometry for quantitative plasma proteome analysis.

Hong Wang1, Sam Hanash.   

Abstract

Electrospray ionization mass spectrometry (ESI-MS) is an efficient soft ionization procedure for macro biomolecules. However, it is a rather delicate process to produce charged molecules for mass-to-charge ratio (m/z) based measurement. In this chapter, the mechanism of ESI is briefly presented, and the experimental pipeline for quantitative profiling of plasma proteins (prefractionation immunodepletion, protein isotope tagging, 2D-HPLC separation of intact proteins, and LC-MS) is presented as applied by our group in studies of cancer biomarker discovery.

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Year:  2009        PMID： 19544026      PMCID： PMC4678002          DOI： 10.1007/978-1-60761-157-8_13

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  10 in total

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Authors:  Andrew Keller; Alexey I Nesvizhskii; Eugene Kolker; Ruedi Aebersold
Journal:  Anal Chem       Date:  2002-10-15       Impact factor: 6.986

2.  A statistical model for identifying proteins by tandem mass spectrometry.

Authors:  Alexey I Nesvizhskii; Andrew Keller; Eugene Kolker; Ruedi Aebersold
Journal:  Anal Chem       Date:  2003-09-01       Impact factor: 6.986

3.  General framework for developing and evaluating database scoring algorithms using the TANDEM search engine.

Authors:  Brendan MacLean; Jimmy K Eng; Ronald C Beavis; Martin McIntosh
Journal:  Bioinformatics       Date:  2006-07-28       Impact factor: 6.937

4.  Quantitative analysis of acrylamide labeled serum proteins by LC-MS/MS.

Authors:  Vitor Faca; Marc Coram; Doug Phanstiel; Veronika Glukhova; Qing Zhang; Matthew Fitzgibbon; Martin McIntosh; Samir Hanash
Journal:  J Proteome Res       Date:  2006-08       Impact factor: 4.466

5.  Computational Proteomics Analysis System (CPAS): an extensible, open-source analytic system for evaluating and publishing proteomic data and high throughput biological experiments.

Authors:  Adam Rauch; Matthew Bellew; Jimmy Eng; Matthew Fitzgibbon; Ted Holzman; Peter Hussey; Mark Igra; Brendan Maclean; Chen Wei Lin; Andrea Detter; Ruihua Fang; Vitor Faca; Phil Gafken; Heidi Zhang; Jeffrey Whiteaker; Jeffrey Whitaker; David States; Sam Hanash; Amanda Paulovich; Martin W McIntosh
Journal:  J Proteome Res       Date:  2006-01       Impact factor: 4.466

6.  Modification of cysteine residues by alkylation. A tool in peptide mapping and protein identification.

Authors:  S Sechi; B T Chait
Journal:  Anal Chem       Date:  1998-12-15       Impact factor: 6.986

7.  Analytical properties of the nanoelectrospray ion source.

Authors:  M Wilm; M Mann
Journal:  Anal Chem       Date:  1996-01-01       Impact factor: 6.986

Review 8.  Electrospray ionization for mass spectrometry of large biomolecules.

Authors:  J B Fenn; M Mann; C K Meng; S F Wong; C M Whitehouse
Journal:  Science       Date:  1989-10-06       Impact factor: 47.728

9.  A wide range of protein isoforms in serum and plasma uncovered by a quantitative intact protein analysis system.

Authors:  David E Misek; Rork Kuick; Hong Wang; Vladimir Galchev; Bin Deng; Rong Zhao; John Tra; Michael R Pisano; Ravi Amunugama; David Allen; Angela K Walker; John R Strahler; Philip Andrews; Gilbert S Omenn; Samir M Hanash
Journal:  Proteomics       Date:  2005-08       Impact factor: 3.984

10.  Intact-protein-based high-resolution three-dimensional quantitative analysis system for proteome profiling of biological fluids.

Authors:  Hong Wang; Shawn G Clouthier; Vladimir Galchev; David E Misek; Ulrich Duffner; Chang-Ki Min; Rong Zhao; John Tra; Gilbert S Omenn; James L M Ferrara; Samir M Hanash
Journal:  Mol Cell Proteomics       Date:  2005-02-09       Impact factor: 5.911
  10 in total
  3 in total

1.  Ligand-binding mass spectrometry to study biotransformation of fusion protein drugs and guide immunoassay development: strategic approach and application to peptibodies targeting the thrombopoietin receptor.

Authors:  Michael P Hall; Colin Gegg; Kenneth Walker; Christopher Spahr; Robert Ortiz; Vimal Patel; Steven Yu; Liana Zhang; Hsieng Lu; Binodh DeSilva; Jean W Lee
Journal:  AAPS J       Date:  2010-07-13       Impact factor: 4.009

2.  Proteomic consequences of expression and pathological conversion of the prion protein in inducible neuroblastoma N2a cells.

Authors:  Monique Provansal; Stéphane Roche; Manuela Pastore; Danielle Casanova; Maxime Belondrade; Sandrine Alais; Pascal Leblanc; Otto Windl; Sylvain Lehmann
Journal:  Prion       Date:  2010-10-27       Impact factor: 3.931

3.  Integrated mass spectrometry-based analysis of plasma glycoproteins and their glycan modifications.

Authors:  Hong Wang; Chee-Hong Wong; Alice Chin; Ayumu Taguchi; Allen Taylor; Samir Hanash; Sadanori Sekiya; Hidenori Takahashi; Masaki Murase; Shigeki Kajihara; Shinichi Iwamoto; Koichi Tanaka
Journal:  Nat Protoc       Date:  2011-02-10       Impact factor: 13.491
  3 in total

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