Literature DB >> 19541336

Portal control of viral prohead expansion and DNA packaging.

Krishanu Ray1, Mark Oram, Jinxia Ma, Lindsay W Black.   

Abstract

Bacteriophage T4 terminase packages DNA in vitro into empty small or large proheads (esps or elps). In vivo maturation of esps yields the more stable and voluminous elps required to contain the 170 kb T4 genome. Functional proheads can be assembled containing portal-GFP fusion proteins. In the absence of terminase activity these accumulated in esps in vivo, whereas wild-type portals were found in elps. By nuclease protection assay dsDNAs of lengths 0.1, 0.2, 0.5, 5, 11, 20, 40 or 170 kb were efficiently packaged into wild-type elps in vitro, but less so into esps and gp20-GFP elps; particularly with DNAs shorter than 11 kb. However, 0.1 kb substrates were equally efficiently packaged into all types of proheads as judged by fluorescence correlation spectroscopy. These data suggest the portal controls the expansion of the major capsid protein lattice during prohead maturation, and that this expansion is necessary for DNA protection but not for packaging.

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Year:  2009        PMID: 19541336      PMCID: PMC2739799          DOI: 10.1016/j.virol.2009.05.029

Source DB:  PubMed          Journal:  Virology        ISSN: 0042-6822            Impact factor:   3.616


  32 in total

1.  Membrane-associated assembly of a phage T4 DNA entrance vertex structure studied with expression vectors.

Authors:  G Michaud; A Zachary; V B Rao; L W Black
Journal:  J Mol Biol       Date:  1989-10-20       Impact factor: 5.469

2.  The structure of an infectious P22 virion shows the signal for headful DNA packaging.

Authors:  Gabriel C Lander; Liang Tang; Sherwood R Casjens; Eddie B Gilcrease; Peter Prevelige; Anton Poliakov; Clinton S Potter; Bridget Carragher; John E Johnson
Journal:  Science       Date:  2006-05-18       Impact factor: 47.728

3.  The maturation-dependent conformational change of phage T4 capsid involves the translocation of specific epitopes between the inner and the outer capsid surfaces.

Authors:  A C Steven; A C Bauer; M E Bisher; F A Robey; L W Black
Journal:  J Struct Biol       Date:  1991-06       Impact factor: 2.867

4.  Dynamic motions of free and bound O29 scaffolding protein identified by hydrogen deuterium exchange mass spectrometry.

Authors:  Chi-Yu Fu; Peter E Prevelige
Journal:  Protein Sci       Date:  2006-03-07       Impact factor: 6.725

Review 5.  DNA packaging in dsDNA bacteriophages.

Authors:  L W Black
Journal:  Annu Rev Microbiol       Date:  1989       Impact factor: 15.500

6.  Gene 20 product of bacteriophage T4. II. Its structural organization in prehead and bacteriophage.

Authors:  R A Driedonks; J Caldentey
Journal:  J Mol Biol       Date:  1983-05-25       Impact factor: 5.469

7.  DNA sequences necessary for packaging of bacteriophage lambda DNA.

Authors:  B Hohn
Journal:  Proc Natl Acad Sci U S A       Date:  1983-12       Impact factor: 11.205

8.  Analysis of capsid portal protein and terminase functional domains: interaction sites required for DNA packaging in bacteriophage T4.

Authors:  H Lin; V B Rao; L W Black
Journal:  J Mol Biol       Date:  1999-06-04       Impact factor: 5.469

9.  The bacteriophage T4 DNA packaging apparatus targets the unexpanded prohead.

Authors:  P J Jardine; M C McCormick; C Lutze-Wallace; D H Coombs
Journal:  J Mol Biol       Date:  1998-12-04       Impact factor: 5.469

10.  Modulation of the packaging reaction of bacteriophage t4 terminase by DNA structure.

Authors:  Mark Oram; Chandran Sabanayagam; Lindsay W Black
Journal:  J Mol Biol       Date:  2008-06-05       Impact factor: 5.469

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  19 in total

1.  The large terminase DNA packaging motor grips DNA with its ATPase domain for cleavage by the flexible nuclease domain.

Authors:  Brendan J Hilbert; Janelle A Hayes; Nicholas P Stone; Rui-Gang Xu; Brian A Kelch
Journal:  Nucleic Acids Res       Date:  2017-04-07       Impact factor: 16.971

Review 2.  Old, new, and widely true: The bacteriophage T4 DNA packaging mechanism.

Authors:  Lindsay W Black
Journal:  Virology       Date:  2015-02-27       Impact factor: 3.616

3.  Structure-function analysis of the DNA translocating portal of the bacteriophage T4 packaging machine.

Authors:  Victor Padilla-Sanchez; Song Gao; Hyung Rae Kim; Daisuke Kihara; Lei Sun; Michael G Rossmann; Venigalla B Rao
Journal:  J Mol Biol       Date:  2013-10-11       Impact factor: 5.469

4.  Dynamics of the T4 bacteriophage DNA packasome motor: endonuclease VII resolvase release of arrested Y-DNA substrates.

Authors:  Aparna Dixit; Krishanu Ray; Joseph R Lakowicz; Lindsay W Black
Journal:  J Biol Chem       Date:  2011-03-29       Impact factor: 5.157

5.  Structural basis for scaffolding-mediated assembly and maturation of a dsDNA virus.

Authors:  Dong-Hua Chen; Matthew L Baker; Corey F Hryc; Frank DiMaio; Joanita Jakana; Weimin Wu; Matthew Dougherty; Cameron Haase-Pettingell; Michael F Schmid; Wen Jiang; David Baker; Jonathan A King; Wah Chiu
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-10       Impact factor: 11.205

Review 6.  Structure, assembly, and DNA packaging of the bacteriophage T4 head.

Authors:  Lindsay W Black; Venigalla B Rao
Journal:  Adv Virus Res       Date:  2012       Impact factor: 9.937

7.  Three reversible and controllable discrete steps of channel gating of a viral DNA packaging motor.

Authors:  Jia Geng; Huaming Fang; Farzin Haque; Le Zhang; Peixuan Guo
Journal:  Biomaterials       Date:  2011-07-31       Impact factor: 12.479

8.  Role of channel lysines and the "push through a one-way valve" mechanism of the viral DNA packaging motor.

Authors:  Huaming Fang; Peng Jing; Farzin Haque; Peixuan Guo
Journal:  Biophys J       Date:  2012-01-03       Impact factor: 4.033

9.  DNA crunching by a viral packaging motor: Compression of a procapsid-portal stalled Y-DNA substrate.

Authors:  Krishanu Ray; Chandran R Sabanayagam; Joseph R Lakowicz; Lindsay W Black
Journal:  Virology       Date:  2010-01-12       Impact factor: 3.616

10.  Function and horizontal transfer of the small terminase subunit of the tailed bacteriophage Sf6 DNA packaging nanomotor.

Authors:  Justin C Leavitt; Eddie B Gilcrease; Kassandra Wilson; Sherwood R Casjens
Journal:  Virology       Date:  2013-04-04       Impact factor: 3.616

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