Literature DB >> 19533711

Photochemical regulation of restriction endonuclease activity.

Douglas D Young1, Jeane M Govan, Mark O Lively, Alexander Deiters.   

Abstract

Removal by the light: The photochemical regulation of restriction endonucleases, which are important enzymes in molecular biology, has been investigated. Photolabile protecting groups have been installed on DNA substrates and have been demonstrated to inhibit restriction endonuclease activity until removed by UV light irradiation. Interestingly, these groups do not appear to dramatically affect initial binding of the enzyme to the DNA substrate, but rather prevent recognition of the specific cleavage site.

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Year:  2009        PMID: 19533711      PMCID: PMC2983471          DOI: 10.1002/cbic.200900090

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  31 in total

1.  Structure of free BglII reveals an unprecedented scissor-like motion for opening an endonuclease.

Authors:  C M Lukacs; R Kucera; I Schildkraut; A K Aggarwal
Journal:  Nat Struct Biol       Date:  2001-02

2.  Triggering DNAzymes with light: a photoactive C8 thioether-linked adenosine.

Authors:  Richard Ting; Leonard Lermer; David M Perrin
Journal:  J Am Chem Soc       Date:  2004-10-13       Impact factor: 15.419

3.  Light-triggered polymerase chain reaction.

Authors:  Douglas D Young; Wesleigh F Edwards; Hrvoje Lusic; Mark O Lively; Alexander Deiters
Journal:  Chem Commun (Camb)       Date:  2007-11-14       Impact factor: 6.222

4.  Site-selective blocking of PCR by a caged nucleotide leading to direct creation of desired sticky ends in the products.

Authors:  Keita Tanaka; Hitoshi Katada; Narumi Shigi; Akinori Kuzuya; Makoto Komiyama
Journal:  Chembiochem       Date:  2008-09-01       Impact factor: 3.164

5.  Refinement of Eco RI endonuclease crystal structure: a revised protein chain tracing.

Authors:  Y C Kim; J C Grable; R Love; P J Greene; J M Rosenberg
Journal:  Science       Date:  1990-09-14       Impact factor: 47.728

Review 6.  Restriction endonucleases.

Authors:  R J Roberts
Journal:  CRC Crit Rev Biochem       Date:  1976-11

7.  Digestion of highly modified bacteriophage DNA by restriction endonucleases.

Authors:  L H Huang; C M Farnet; K C Ehrlich; M Ehrlich
Journal:  Nucleic Acids Res       Date:  1982-03-11       Impact factor: 16.971

8.  Light-regulated catalysis by an RNA-cleaving deoxyribozyme.

Authors:  Yong Liu; Dipankar Sen
Journal:  J Mol Biol       Date:  2004-08-20       Impact factor: 5.469

Review 9.  Restriction endonucleases: classification, properties, and applications.

Authors:  Raymond J Williams
Journal:  Mol Biotechnol       Date:  2003-03       Impact factor: 2.860

10.  Regulating gene expression in human leukemia cells using light-activated oligodeoxynucleotides.

Authors:  XinJing Tang; Jyothishmathi Swaminathan; Alan M Gewirtz; Ivan J Dmochowski
Journal:  Nucleic Acids Res       Date:  2007-12-01       Impact factor: 16.971

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  8 in total

1.  Optically Triggered Immune Response through Photocaged Oligonucleotides.

Authors:  Jeane M Govan; Douglas D Young; Mark O Lively; Alexander Deiters
Journal:  Tetrahedron Lett       Date:  2015-06-03       Impact factor: 2.415

2.  Activation and deactivation of DNAzyme and antisense function with light for the photochemical regulation of gene expression in mammalian cells.

Authors:  Douglas D Young; Mark O Lively; Alexander Deiters
Journal:  J Am Chem Soc       Date:  2010-05-05       Impact factor: 15.419

3.  Stabilization and photochemical regulation of antisense agents through PEGylation.

Authors:  Jeane M Govan; Andrew L McIver; Alexander Deiters
Journal:  Bioconjug Chem       Date:  2011-09-30       Impact factor: 4.774

4.  Regulation of transcription through light-activation and light-deactivation of triplex-forming oligonucleotides in mammalian cells.

Authors:  Jeane M Govan; Rajendra Uprety; James Hemphill; Mark O Lively; Alexander Deiters
Journal:  ACS Chem Biol       Date:  2012-05-11       Impact factor: 5.100

5.  Optochemical control of deoxyoligonucleotide function via a nucleobase-caging approach.

Authors:  Qingyang Liu; Alexander Deiters
Journal:  Acc Chem Res       Date:  2013-08-28       Impact factor: 22.384

6.  A study on endonuclease BspD6I and its stimulus-responsive switching by modified oligonucleotides.

Authors:  Liudmila A Abrosimova; Anzhela Yu Migur; Elena A Kubareva; Timofei S Zatsepin; Aleksandra V Gavshina; Alfiya K Yunusova; Tatiana A Perevyazova; Alfred Pingoud; Tatiana S Oretskaya
Journal:  PLoS One       Date:  2018-11-26       Impact factor: 3.240

Review 7.  Photochemical modifications for DNA/RNA oligonucleotides.

Authors:  Amirrasoul Tavakoli; Jung-Hyun Min
Journal:  RSC Adv       Date:  2022-02-24       Impact factor: 3.361

8.  Light-induced modulation of DNA recognition by the Rad4/XPC damage sensor protein.

Authors:  Amirrasoul Tavakoli; Debamita Paul; Hong Mu; Jagannath Kuchlyan; Saroj Baral; Anjum Ansari; Suse Broyde; Jung-Hyun Min
Journal:  RSC Chem Biol       Date:  2021-01-06
  8 in total

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