Literature DB >> 19533405

Fuzzy-logic based strategy for validation of multiplex methods: example with qualitative GMO assays.

Gianni Bellocchi1, Vincent Bertholet, Sandrine Hamels, W Moens, José Remacle, Guy Van den Eede.   

Abstract

This paper illustrates the advantages that a fuzzy-based aggregation method could bring into the validation of a multiplex method for GMO detection (DualChip GMO kit, Eppendorf). Guidelines for validation of chemical, bio-chemical, pharmaceutical and genetic methods have been developed and ad hoc validation statistics are available and routinely used, for in-house and inter-laboratory testing, and decision-making. Fuzzy logic allows summarising the information obtained by independent validation statistics into one synthetic indicator of overall method performance. The microarray technology, introduced for simultaneous identification of multiple GMOs, poses specific validation issues (patterns of performance for a variety of GMOs at different concentrations). A fuzzy-based indicator for overall evaluation is illustrated in this paper, and applied to validation data for different genetically modified elements. Remarks were drawn on the analytical results. The fuzzy-logic based rules were shown to be applicable to improve interpretation of results and facilitate overall evaluation of the multiplex method.

Mesh:

Year:  2009        PMID: 19533405     DOI: 10.1007/s11248-009-9293-9

Source DB:  PubMed          Journal:  Transgenic Res        ISSN: 0962-8819            Impact factor:   2.788


  5 in total

1.  Analytical Method Performance Evaluation (AMPE)--a software tool for analytical method validation.

Authors:  Marco Acutis; Patrizia Trevisiol; Roberto Confalonieri; Gianni Bellocchi; Emanuele Grazioli; Guy Van den Eede; Claudia Paoletti
Journal:  J AOAC Int       Date:  2007 Sep-Oct       Impact factor: 1.913

2.  Worldwide interlaboratory study on the determination of ochratoxin A in different wine type samples.

Authors:  N Ratola; P Barros; T Simões; A Cerdeira; A Venâncio; A Alves
Journal:  Talanta       Date:  2006-07-03       Impact factor: 6.057

3.  A microarray analysis of wheat grain hardness.

Authors:  Bryan Clarke; Sadequr Rahman
Journal:  Theor Appl Genet       Date:  2005-04-02       Impact factor: 5.699

4.  Assessment of real-time PCR based methods for quantification of pollen-mediated gene flow from GM to conventional maize in a field study.

Authors:  Maria Pla; José-Luis La Paz; Gisela Peñas; Nora García; Montserrat Palaudelmàs; Teresa Esteve; Joaquima Messeguer; Enric Melé
Journal:  Transgenic Res       Date:  2006-04       Impact factor: 2.788

5.  A microarray-based comparative analysis of gene expression profiles during grain development in transgenic and wild type wheat.

Authors:  Per L Gregersen; Henrik Brinch-Pedersen; Preben B Holm
Journal:  Transgenic Res       Date:  2005-12       Impact factor: 2.788

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.