Literature DB >> 19527670

A novel approach to high accuracy of video-based microrheology.

Pei-Hsun Wu1, Stephen H Arce, Patrick R Burney, Yiider Tseng.   

Abstract

Video-based particle tracking monitors the microscopic movement of labeled biomolecules and fluorescent probes within a complex cellular environment. Information gained from this technique enables us to extract the dynamic behavior of biomolecules and the local mechanical properties inside the cell from a tracked particle's mean-square displacement (MSD). However, MSD measurements are highly susceptible to static error introduced by noise in the image acquisition process that leads to an incorrect positioning of the particle. Static error can mask the subtle effects from the local microenvironment on the MSD and potentially generate misleading conclusions about the biophysical properties of cells. An approach that greatly increases the accuracy of MSD measurements is presented herein by combining experimental data with Monte Carlo simulations to eliminate the inherent static error. This practical method of static error correction greatly advances particle-tracking techniques.

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Year:  2009        PMID: 19527670      PMCID: PMC2712022          DOI: 10.1016/j.bpj.2009.03.029

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  16 in total

1.  Multiple-particle tracking measurements of heterogeneities in solutions of actin filaments and actin bundles.

Authors:  J Apgar; Y Tseng; E Fedorov; M B Herwig; S C Almo; D Wirtz
Journal:  Biophys J       Date:  2000-08       Impact factor: 4.033

2.  Precise nanometer localization analysis for individual fluorescent probes.

Authors:  Russell E Thompson; Daniel R Larson; Watt W Webb
Journal:  Biophys J       Date:  2002-05       Impact factor: 4.033

3.  Regulation of AMPA receptor lateral movements.

Authors:  Aren J Borgdorff; Daniel Choquet
Journal:  Nature       Date:  2002-06-06       Impact factor: 49.962

4.  Three-dimensional tracking of fluorescent nanoparticles with subnanometer precision by use of off-focus imaging.

Authors:  Michael Speidel; Alexandr Jonás; Ernst-Ludwig Florin
Journal:  Opt Lett       Date:  2003-01-15       Impact factor: 3.776

5.  Apparent subdiffusion inherent to single particle tracking.

Authors:  Douglas S Martin; Martin B Forstner; Josef A Käs
Journal:  Biophys J       Date:  2002-10       Impact factor: 4.033

6.  Rho kinase regulates the intracellular micromechanical response of adherent cells to rho activation.

Authors:  Thomas P Kole; Yiider Tseng; Lawrence Huang; Joseph L Katz; Denis Wirtz
Journal:  Mol Biol Cell       Date:  2004-05-14       Impact factor: 4.138

7.  Single particle tracking. Analysis of diffusion and flow in two-dimensional systems.

Authors:  H Qian; M P Sheetz; E L Elson
Journal:  Biophys J       Date:  1991-10       Impact factor: 4.033

Review 8.  Single-particle tracking: applications to membrane dynamics.

Authors:  M J Saxton; K Jacobson
Journal:  Annu Rev Biophys Biomol Struct       Date:  1997

9.  Nuclear body movement is determined by chromatin accessibility and dynamics.

Authors:  Sabine M Görisch; Malte Wachsmuth; Carina Ittrich; Christian P Bacher; Karsten Rippe; Peter Lichter
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-26       Impact factor: 11.205

10.  Single-particle tracking of membrane protein diffusion in a potential: simulation, detection, and application to confined diffusion of CFTR Cl- channels.

Authors:  Songwan Jin; Peter M Haggie; A S Verkman
Journal:  Biophys J       Date:  2007-05-04       Impact factor: 4.033

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  12 in total

1.  Analysis of video-based microscopic particle trajectories using Kalman filtering.

Authors:  Pei-Hsun Wu; Ashutosh Agarwal; Henry Hess; Pramod P Khargonekar; Yiider Tseng
Journal:  Biophys J       Date:  2010-06-16       Impact factor: 4.033

2.  Differential vesicular sorting of AMPA and GABAA receptors.

Authors:  Yi Gu; Shu-Ling Chiu; Bian Liu; Pei-Hsun Wu; Michael Delannoy; Da-Ting Lin; Denis Wirtz; Richard L Huganir
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-02       Impact factor: 11.205

3.  Interactive, computer-assisted tracking of speckle trajectories in fluorescence microscopy: application to actin polymerization and membrane fusion.

Authors:  Matthew B Smith; Erdem Karatekin; Andrea Gohlke; Hiroaki Mizuno; Naoki Watanabe; Dimitrios Vavylonis
Journal:  Biophys J       Date:  2011-10-05       Impact factor: 4.033

4.  High-throughput ballistic injection nanorheology to measure cell mechanics.

Authors:  Pei-Hsun Wu; Christopher M Hale; Wei-Chiang Chen; Jerry S H Lee; Yiider Tseng; Denis Wirtz
Journal:  Nat Protoc       Date:  2012-01-05       Impact factor: 13.491

5.  Cell cycle-dependent alteration in NAC1 nuclear body dynamics and morphology.

Authors:  Pei-Hsun Wu; Shen-Hsiu Hung; Tina Ren; Ie-Ming Shih; Yiider Tseng
Journal:  Phys Biol       Date:  2011-02-07       Impact factor: 2.583

6.  Statistical analysis of cell migration in 3D using the anisotropic persistent random walk model.

Authors:  Pei-Hsun Wu; Anjil Giri; Denis Wirtz
Journal:  Nat Protoc       Date:  2015-02-26       Impact factor: 13.491

7.  A general method for improving spatial resolution by optimization of electron multiplication in CCD imaging.

Authors:  Pei-Hsun Wu; Nathaniel Nelson; Yiider Tseng
Journal:  Opt Express       Date:  2010-03-01       Impact factor: 3.894

8.  Multi-frequency passive and active microrheology with optical tweezers.

Authors:  Randhir Kumar; Valerio Vitali; Timo Wiedemann; Robert Meissner; Paolo Minzioni; Cornelia Denz
Journal:  Sci Rep       Date:  2021-07-06       Impact factor: 4.379

9.  Depth-resolved cellular microrheology using HiLo microscopy.

Authors:  Jarett Michaelson; Heejin Choi; Peter So; Hayden Huang
Journal:  Biomed Opt Express       Date:  2012-05-03       Impact factor: 3.732

10.  Displacement correlations between a single mesenchymal-like cell and its nucleus effectively link subcellular activities and motility in cell migration analysis.

Authors:  Tian Lan; Kai Cheng; Tina Ren; Stephen Hugo Arce; Yiider Tseng
Journal:  Sci Rep       Date:  2016-09-27       Impact factor: 4.379

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