Literature DB >> 19523896

Invasive DNA, chopped and in the CRISPR.

Luciano A Marraffini1, Erik J Sontheimer.   

Abstract

In this issue of Structure, Wiedenheft et al. describe the structure and activity of Cas1, the only protein associated with all CRISPR loci. Cas1 is a metal-dependent deoxyribonuclease, consistent with a role in the adaptation phase of CRISPR immunity against invading nucleic acids.

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Year:  2009        PMID： 19523896      PMCID： PMC2711432          DOI： 10.1016/j.str.2009.05.002

Source DB:  PubMed          Journal:  Structure        ISSN： 0969-2126            Impact factor:   5.006


  9 in total

1.  CRISPR provides acquired resistance against viruses in prokaryotes.

Authors:  Rodolphe Barrangou; Christophe Fremaux; Hélène Deveau; Melissa Richards; Patrick Boyaval; Sylvain Moineau; Dennis A Romero; Philippe Horvath
Journal:  Science       Date:  2007-03-23       Impact factor: 47.728

Review 2.  CRISPR--a widespread system that provides acquired resistance against phages in bacteria and archaea.

Authors:  Rotem Sorek; Victor Kunin; Philip Hugenholtz
Journal:  Nat Rev Microbiol       Date:  2008-03       Impact factor: 60.633

3.  Characterization of the endonuclease SSO2001 from Sulfolobus solfataricus P2.

Authors:  Dong Han; Gerhard Krauss
Journal:  FEBS Lett       Date:  2009-01-25       Impact factor: 4.124

4.  Small CRISPR RNAs guide antiviral defense in prokaryotes.

Authors:  Stan J J Brouns; Matthijs M Jore; Magnus Lundgren; Edze R Westra; Rik J H Slijkhuis; Ambrosius P L Snijders; Mark J Dickman; Kira S Makarova; Eugene V Koonin; John van der Oost
Journal:  Science       Date:  2008-08-15       Impact factor: 47.728

5.  CRISPR interference limits horizontal gene transfer in staphylococci by targeting DNA.

Authors:  Luciano A Marraffini; Erik J Sontheimer
Journal:  Science       Date:  2008-12-19       Impact factor: 47.728

6.  Phage response to CRISPR-encoded resistance in Streptococcus thermophilus.

Authors:  Hélène Deveau; Rodolphe Barrangou; Josiane E Garneau; Jessica Labonté; Christophe Fremaux; Patrick Boyaval; Dennis A Romero; Philippe Horvath; Sylvain Moineau
Journal:  J Bacteriol       Date:  2007-12-07       Impact factor: 3.490

7.  Prokaryotic silencing (psi)RNAs in Pyrococcus furiosus.

Authors:  Caryn Hale; Kyle Kleppe; Rebecca M Terns; Michael P Terns
Journal:  RNA       Date:  2008-10-29       Impact factor: 4.942

8.  Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated genome defense.

Authors:  Blake Wiedenheft; Kaihong Zhou; Martin Jinek; Scott M Coyle; Wendy Ma; Jennifer A Doudna
Journal:  Structure       Date:  2009-06-10       Impact factor: 5.006

9.  A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes.

Authors:  Daniel H Haft; Jeremy Selengut; Emmanuel F Mongodin; Karen E Nelson
Journal:  PLoS Comput Biol       Date:  2005-11-11       Impact factor: 4.475
  9 in total
  12 in total

1.  Nature and intensity of selection pressure on CRISPR-associated genes.

Authors:  Nobuto Takeuchi; Yuri I Wolf; Kira S Makarova; Eugene V Koonin
Journal:  J Bacteriol       Date:  2011-12-16       Impact factor: 3.490

2.  Knowledge-based discovery for designing CRISPR-CAS systems against invading mobilomes in thermophiles.

Authors:  P Chellapandi; J Ranjani
Journal:  Syst Synth Biol       Date:  2015-08-06

Review 3.  An overview of RNAs with regulatory functions in gram-positive bacteria.

Authors:  Pascale Romby; Emmanuelle Charpentier
Journal:  Cell Mol Life Sci       Date:  2009-10-27       Impact factor: 9.261

4.  RNA in defense: CRISPRs protect prokaryotes against mobile genetic elements.

Authors:  Matthijs M Jore; Stan J J Brouns; John van der Oost
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-06-01       Impact factor: 10.005

5.  Association between living environment and human oral viral ecology.

Authors:  Refugio Robles-Sikisaka; Melissa Ly; Tobias Boehm; Mayuri Naidu; Julia Salzman; David T Pride
Journal:  ISME J       Date:  2013-04-18       Impact factor: 10.302

6.  Bridge Helix of Cas9 Modulates Target DNA Cleavage and Mismatch Tolerance.

Authors:  Kesavan Babu; Nadia Amrani; Wei Jiang; S D Yogesha; Richard Nguyen; Peter Z Qin; Rakhi Rajan
Journal:  Biochemistry       Date:  2019-03-27       Impact factor: 3.162

7.  Comparisons of clustered regularly interspaced short palindromic repeats and viromes in human saliva reveal bacterial adaptations to salivary viruses.

Authors:  David T Pride; Julia Salzman; David A Relman
Journal:  Environ Microbiol       Date:  2012-05-15       Impact factor: 5.491

8.  The use of microbead-based spoligotyping for Mycobacterium tuberculosis complex to evaluate the quality of the conventional method: providing guidelines for Quality Assurance when working on membranes.

Authors:  Edgar Abadia; Jian Zhang; Viviana Ritacco; Kristin Kremer; Raymond Ruimy; Leen Rigouts; Harrison Magdinier Gomes; Atiná Ribeiro Elias; Maryse Fauville-Dufaux; Karolien Stoffels; Voahangy Rasolofo-Razanamparany; Darío Garcia de Viedma; Marta Herranz; Sahal Al-Hajoj; Nalin Rastogi; Carlo Garzelli; Enrico Tortoli; Philip N Suffys; Dick van Soolingen; Guislaine Refrégier; Christophe Sola
Journal:  BMC Infect Dis       Date:  2011-04-28       Impact factor: 3.090

9.  Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems.

Authors:  Kira S Makarova; L Aravind; Yuri I Wolf; Eugene V Koonin
Journal:  Biol Direct       Date:  2011-07-14       Impact factor: 4.540

10.  Expanding the catalog of cas genes with metagenomes.

Authors:  Quan Zhang; Thomas G Doak; Yuzhen Ye
Journal:  Nucleic Acids Res       Date:  2013-12-06       Impact factor: 16.971
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