Literature DB >> 19518256

Rigorous treatment of electrostatics for spatially varying dielectrics based on energy minimization.

O I Obolensky1, T P Doerr, R Ray, Yi-Kuo Yu.   

Abstract

An energy minimization formulation of electrostatics that allows computation of the electrostatic energy and forces to any desired accuracy in a system with arbitrary dielectric properties is presented. An integral equation for the scalar charge density is derived from an energy functional of the polarization vector field. This energy functional represents the true energy of the system even in nonequilibrium states. Arbitrary accuracy is achieved by solving the integral equation for the charge density via a series expansion in terms of the equation's kernel, which depends only on the geometry of the dielectrics. The streamlined formalism operates with volume charge distributions only, not resorting to introducing surface charges by hand. Therefore, it can be applied to any spatial variation of the dielectric susceptibility, which is of particular importance in applications to biomolecular systems. The simplicity of application of the formalism to real problems is shown with analytical and numerical examples.

Entities:  

Mesh:

Year:  2009        PMID: 19518256      PMCID: PMC2775418          DOI: 10.1103/PhysRevE.79.041907

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  9 in total

Review 1.  Generalized born models of macromolecular solvation effects.

Authors:  D Bashford; D A Case
Journal:  Annu Rev Phys Chem       Date:  2000       Impact factor: 12.703

2.  Implicit Solvation Models: Equilibria, Structure, Spectra, and Dynamics.

Authors:  Christopher J. Cramer; Donald G. Truhlar
Journal:  Chem Rev       Date:  1999-08-11       Impact factor: 60.622

3.  On a class of integrals of Legendre polynomials with complicated arguments--with applications in electrostatics and biomolecular modeling.

Authors:  Yi-Kuo Yu
Journal:  Physica A       Date:  2003-08-15       Impact factor: 3.263

4.  Potential energy functions for atomic-level simulations of water and organic and biomolecular systems.

Authors:  William L Jorgensen; Julian Tirado-Rives
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-03       Impact factor: 11.205

Review 5.  Water dynamics in the hydration layer around proteins and micelles.

Authors:  Biman Bagchi
Journal:  Chem Rev       Date:  2005-09       Impact factor: 60.622

6.  Electrostatics of charged dielectric spheres with application to biological systems.

Authors:  T P Doerr; Yi-Kuo Yu
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-06-02

Review 7.  Recent advances in implicit solvent-based methods for biomolecular simulations.

Authors:  Jianhan Chen; Charles L Brooks; Jana Khandogin
Journal:  Curr Opin Struct Biol       Date:  2008-03-04       Impact factor: 6.809

8.  Electrostatic free energy and its variations in implicit solvent models.

Authors:  Jianwei Che; Joachim Dzubiella; Bo Li; J Andrew McCammon
Journal:  J Phys Chem B       Date:  2008-02-15       Impact factor: 2.991

Review 9.  Electrostatic interactions in membranes and proteins.

Authors:  B H Honig; W L Hubbell; R F Flewelling
Journal:  Annu Rev Biophys Biophys Chem       Date:  1986
  9 in total
  2 in total

1.  MEAN-FIELD THEORY AND COMPUTATION OF ELECTROSTATICS WITH IONIC CONCENTRATION DEPENDENT DIELECTRICS.

Authors:  B O Li; Jiayi Wen; Shenggao Zhou
Journal:  Commun Math Sci       Date:  2016       Impact factor: 1.120

2.  Rigorous treatment of pairwise and many-body electrostatic interactions among dielectric spheres at the Debye-Hückel level.

Authors:  O I Obolensky; T P Doerr; Yi-Kuo Yu
Journal:  Eur Phys J E Soft Matter       Date:  2021-10-18       Impact factor: 1.890

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.